barSeed - Barley Seed Development Database

Probe CUST_32594_PI390587928

Source Contig U35_31858

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32594_PI390587928	Hv_44K_v2	TATCAAGTATCAGTACGCCAACCACTCGGGCAACTACCGCTACTGGGGCAAGGGCACCAT	391	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54126.1	2032	2e-24	1591 - 1650	100	60 / 60	minus	ABC02289
MLOC	MLOC_54126.2	2128	2e-24	1687 - 1746	100	60 / 60	minus	ABC02289
JLOC1	JLOC1_34829.1	2098	8e-25	383 - 442	100	60 / 60	plus
Harvest35	U35_31858	596	3e-25	392 - 451	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_31858 596 Hv_44K_v2
AGCTTGGACCCCAGTAGCAGCAGGAGGAGCTGCCTGCCAGTGCGTATATGATACAGGAGA
TGATGATGGCGCACGTCTTCCTGGCGGCGGTGCTGGCCATGGCGGTAGCGGCGGCGACGG
TGGGCGCGTCGCCGCCCGAGGGCATCCAGCCGCTGTCCAAGATCGCCATCCACAAGGCCA
CCGTGGAACTGCACGGCTCCGCGTACGTGCGGGCGACGCCGGCGTTGCTCGGCGACCAGG
GCGAGGACACCGTATGGGTCACCGTGAAATACGGGTGGGAGAACCCTTCCGCCGACGACT
GGATCGCCGTCTTCTCCCCCGCCGATTTCATCTCGGGCTCGTGCCCTAACCCACGGAGGA
ACGCCGACGAGCCGGCACTCTGCACAGCGCCTATCAAGTATCAGTACGCCAACCACTCGG
GCAACTACCGCTACTGGGGCAAGGGCACCATCCGGTTCCAGATCATCAACCAGCGCTCCG
ACTTCTCCTTCGCCCTCTTCACCGGCGGCTTCGAAAATCCGAAACTTGTGGCGGTGTCGA
AGCCGGTGGCGTTCAAGAACCCCAGGCCCCGGTGTTCCCGCGGCTGGCGCAGGGCA

Homology of Contig U35_31858 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41880.1	624	4e-82	protein\|nucleotide pyrophosphatase/phosphodiesterase, putative, expressed
Brachypodium v1_2	Bradi3g41200.1	621	6e-80
Arabidopsis v10	None