- Probe CUST_32576_PI390587928
- Source Contig U35_29545
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32576_PI390587928 | Hv_44K_v2 | CTAAAAAATAATGGCGTGGGACGTAGCAAGGGTACCTATCATATTGGAAAAACTGAAAAA | 32 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.235 | 1.469 | 1.107 | 0.942 | 0.355 | 0.334 |
| Raw | 3737.303 | 6872.983 | 4555.047 | 6097.147 | 813.224 | 822.279 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_28789.1 | 1572 | 4e-23 | 1458 - 1514 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC28867 | 125 | 3e-25 | 33 - 92 | 100 | 60 / 60 | plus | ABC28867 |
| Harvest35 | U35_29545 | 125 | 3e-25 | 33 - 92 | 100 | 60 / 60 | plus |
Contig Sequence (125 bp)
>U35_29545 125 Hv_44K_v2 TAGTTTATCACATGAGCAATGTGGCTTGGCTGCTAAAAAATAATGGCGTGGGACGTAGCA AGGGTACCTATCATATTGGAAAAACTGAAAAAAAAATGATGTGGGATCAAAAAAAAAAAA AAAAA
Homology of Contig U35_29545 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |