- Probe CUST_32575_PI390587928
- Source Contig U35_43839
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32575_PI390587928 | Hv_44K_v2 | ACCTCACTTATTTAGCCTCGGCAATAAGGAAAGGAGCTGACGTACGTGGTTACTTTGTGT | 296 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.812 | 1.089 | 1.754 | 1.631 | 0.496 | 0.670 |
| Raw | 34.617 | 75.467 | 103.341 | 154.529 | 15.659 | 24.039 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251737.1 | 1875 | 2e-24 | 1421 - 1480 | 100 | 60 / 60 | plus | ABC08927 ABC49850 |
| Harvest21 | ABC41017 | 407 | 3e-25 | 297 - 356 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC08927 | 1832 | 3e-25 | 1367 - 1426 | 100 | 60 / 60 | plus | ABC08927 |
| Harvest35 | U35_43839 | 407 | 3e-25 | 297 - 356 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1456 | 1835 | 3e-25 | 1367 - 1426 | 100 | 60 / 60 | plus |
Contig Sequence (407 bp)
>U35_43839 407 Hv_44K_v2 AGATGCGCAAAATCTTGGGCCCAACCCTACCTGAGTTCACATCAAAGCAGAAGAAGAAAC TACATGCAACAAAACTGGATTTTATTGGACTAAATCATTATTCGACATGGTATTTGAAAG ACTGCATCTTTTCACCATGTGAAATGGATCCTATGGATGGGGATGCGCGAGCATTGAGTT TAGCAGAAAGAGATGGTGTGCTTATCGGTAAACAGGTTATGCTCAAGCAAGCAATAGCAG TATGACTGCTAAGGATTTTACCGGCGACACAGAAAGAATTAATTACATCAGTGGCTACCT CACTTATTTAGCCTCGGCAATAAGGAAAGGAGCTGACGTACGTGGTTACTTTGTGTGGTC TCTCCTCGACGACTTTGAGTGGACTTCGGGATACAAGGACAGATTCG
Homology of Contig U35_43839 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g43360.1 | 517 | 4e-51 | protein|Os4bglu14 - monolignol beta-glucoside homologue without catalytic acid/base, expressed |
| Brachypodium v1_2 | Bradi5g15527.1 | 432 | 1e-53 | |
| Arabidopsis v10 | None |