barSeed - Barley Seed Development Database

Probe CUST_32574_PI390587928

Source Contig U35_29546

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32574_PI390587928	Hv_44K_v2	GAAGAGCCGAGAGTGTTTACAGCGAAGAGAGTAGCCGGTGTACAAATTAAACGTAAAAAA	253	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.484	0.844	1.098	1.004	0.463	0.295
Raw	406.055	368.065	406.994	580.266	94.972	65.420

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67798.1	2114	3e-22	188 - 243	100	56 / 56	minus	ABC28868
Harvest21	ABC28868	324	3e-25	254 - 313	100	60 / 60	plus	ABC28868
Harvest35	U35_29546	324	3e-25	254 - 313	100	60 / 60	plus

Contig Sequence (324 bp)

>U35_29546 324 Hv_44K_v2
GCAGAAGCGGCCAAAGCAGATGCCGACAACTCATCGCTCGTGCTGGCCGACTGTGTGTAG
CGGGCGAGGGAGGAGCTAGCATCGATTCTTGGATCATTGAATCCTCGATTGATTCTTTTA
GCTATAGGATTATTTTTTTCTCTCTAGTTTTTGTAATTTTACTCAACTTTTTTGGGGGAT
TCCGAGCAATGCAAGCTGCAATCTCCTTACATCTTTGGCTCCTTTCTTCCTCTTTGGATT
GAGGGCGTGAAGAGAAGAGCCGAGAGTGTTTACAGCGAAGAGAGTAGCCGGTGTACAAAT
TAAACGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_29546 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None