barSeed - Barley Seed Development Database

Probe CUST_32572_PI390587928

Source Contig U35_29548

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32572_PI390587928	Hv_44K_v2	AATGCAGCAGTCGTTCAGTTCTGCTGAACAATTCCGCAATCCATTCTGTTTTTGGAACTG	373	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.393	1.723	1.193	0.801	0.265	0.271
Raw	1543.705	2972.182	1781.940	1977.712	218.187	246.868

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34499.2	4369	2e-24	4174 - 4233	100	60 / 60	plus	None
MLOC	MLOC_34499.1	4380	2e-24	4092 - 4151	100	60 / 60	plus	None
MLOC	MLOC_34499.3	4561	2e-24	4091 - 4150	100	60 / 60	plus	None
JLOC1	JLOC1_22255.1	4499	8e-25	4091 - 4150	100	60 / 60	plus
Harvest21	ABC28872	433	3e-25	374 - 433	100	60 / 60	plus
Harvest35	U35_29548	433	3e-25	374 - 433	100	60 / 60	plus

Contig Sequence (433 bp)

>U35_29548 433 Hv_44K_v2
GCGGGGGCTCTGAGTAATCTAGTGAGGAACTCTGACATCCTCTGTGGAGACATTGTCTCC
CAAGGCGCAATTCAAGCTCTACTCAAGACGGTCAGCAGCTACTCCGCGGTTGCTCTGAGC
CCCAGCAGAAAGGATGCTCTAACTGAATCCCCGCTAAGAATCGTGCTCTTTGCGCTGCGC
AAGATGTGCGACCACACGGTCTGCAGGCTCTTCCTGCGCTCATCCGAGCTGCTCCCGATG
ATCGTGCACCTCAAGCAGTCGCCTGACCAAACGATCTCCGAGTACGCCTCTGCCATCGCT
AGTAAAGCGAACCAAGCTTGACGAATTTCGCCTGGAAGGCGCACCACCGCGAGGGGGGTC
CGTCCTATTCTGTAATGCAGCAGTCGTTCAGTTCTGCTGAACAATTCCGCAATCCATTCT
GTTTTTGGAACTG

Homology of Contig U35_29548 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g17060.1	1335	5e-55
Arabidopsis v10	None