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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_32571_PI390587928Hv_44K_v2ACCTCGACTATGCCTTGCTAGAACGATATGATGTCAGTAGTTAATATCATGCTTGTTTAA524GeneList: black
MasterList: Reassembly_Function_Probe_Module



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0100.1240.9141.6191.2652.284
Raw 10.737368.2112294.0975229.0001806.6593509.093



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC288736413e-25525 - 58410060 / 60plus
Harvest35U35_295496413e-25525 - 58410060 / 60plus



Contig Sequence (641 bp)

>U35_29549 641 Hv_44K_v2
GGCAATCACTAGCGAGGCCAACAACTCTGGTAGTGGCGGGGCCAAGGTGACCGACCTCAT
GGTGGAAGCATGCAAGAACGCCTCAGGTTACAATGAGGGCTACCTATTCAGAAATGTCAC
ACAGGAATTTTGCTTGTCGACCCTTCAGTCGGACAATCGAAGTGTGGTGGCAAAGGACCA
CCTTGAACTGGTGCTCGTTGCCAGCGACATCTTTAAAGGCCGCCTCACTACTGCCAATCA
CAATGTTGAGAAAATGCTACAAAATGCAAAGAACGGCACAGTGACGATGCGCGTTCTCGG
TTTCTGCAAGGTGTACTATGATATAACAATGAGAATCATCAACATATGTGATGCCATGGT
CAAAGACTTCCGCGGAGACAAGGGCATGCTAAATTCTTCTGAGCTTCCTCGTTGTGTTGA
CAAAGCGGGCTACACACTCGACGAGTGCAGGTTCGAATTTCACACAGCTATGCCACGGGC
GGATGCACTAATCAGTGAAAATAATGAGGTTCGCATGCTGGCAGACCTCGACTATGCCTT
GCTAGAACGATATGATGTCAGTAGTTAATATCATGCTTGTTTAAATAATGTTGTAGCGGC
ATCAATTTTATTTCATTTTGAAATAATGATAAAAGTTTCGA



Homology of Contig U35_29549 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None