barSeed - Barley Seed Development Database

Probe CUST_32562_PI390587928

Source Contig U35_17572

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32562_PI390587928	Hv_44K_v2	TTGGTAGGCGTAGTTGTTAATGTTGCTTTAGTTGGCATGTTGGCACCATATGCTCGATTC	412	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.737	1.124	2.405	2.593	0.874	0.788
Raw	59.249	142.602	266.485	471.714	54.875	52.747

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357567	1983	2e-24	1045 - 1104	100	60 / 60	plus	ABC11316 ABC11317 ABC49874
MLOC	AK252537.1	1783	2e-24	976 - 1035	100	60 / 60	plus	ABC11316 ABC11317 ABC49874
MLOC	MLOC_53730.2	1349	2e-24	1091 - 1150	100	60 / 60	plus	ABC11317
MLOC	MLOC_53730.1	1340	2e-24	1059 - 1118	100	60 / 60	plus	ABC11317
JLOC1	JLOC1_34532.3	765	8e-25	383 - 442	100	60 / 60	plus
JLOC1	JLOC1_34532.2	774	8e-25	392 - 451	100	60 / 60	plus
JLOC1	JLOC1_34532.1	1311	8e-25	929 - 988	100	60 / 60	plus
Harvest21	ABC11317	1206	3e-25	413 - 472	100	60 / 60	plus	ABC11317
Harvest35	U35_17572	815	3e-25	413 - 472	100	60 / 60	plus

Contig Sequence (815 bp)

>U35_17572 815 Hv_44K_v2
CGGCGGTGGTGGAGATGGGGATAATGGTGGGGGTGGCGATGGGGGGGATGACCACAATGA
GCGGGATGATGAGCTTGGGCCGATCCTTAGCTTCGAACAGGTAGTCCAGGAGGTGGAGAA
GCAAGGGGTTAGCTTGTCCAGCTTGCCAGCCGATATGATCGAGGCGGCAAAAAGCATGGG
GATTCAGAAGCTGCTGCTGCTGAGATACTTGGACATGCAGGCCTCAGCTTGGCCCATGGG
TCCTGCCATTAGATCCTTTGGGTTTCTCCGGAATAGGATGCTGGTTGATCCTACATTCCT
CTTCAAAATTGGGACGGAGATAGTTATTGACACATGTTGCGCGACTTTTGCGGAGGTTCA
GAAGAGGGGTGATGAGTTTTGGTCGGAATTTGAGTTGTATGCAGCAGATATGTTGGTAGG
CGTAGTTGTTAATGTTGCTTTAGTTGGCATGTTGGCACCATATGCTCGATTCCGTGGGGG
GTCCACATCAGCAGGTCTTCTTGGGCGTGTTAGGCATGCTTATGATGCTCTCCCGAGCAG
TGTTTTTGAAGCTGAAAGGCCAGGATACAGTTTTTCCATTCAACAACGGCTCGGATCATA
CCTTCTCAAGGGATTTTTATATGGTGCAGTTGGATTTTCTTGTGGTCTCGTTGGCCAAGG
CATTGCGAACTTGATAATGACTGCAAAGCGGAGTGTAAAGAAGTCAGAGAATGATGTACC
TGTTCCACCTCTTCTAAAAACTTCTGTTNTGTGGGGTGCGTTCCTTGGTGTCTCTTCCAA
CACCCGTTATCAGGTAATTAATGGGCTTGAGCGCT

Homology of Contig U35_17572 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g13590.1	444	6e-136	protein\|expressed protein
Brachypodium v1_2	Bradi1g53580.1	428	6e-139
Arabidopsis v10	AT2G37860.3	432	2e-101	\| Symbols: LCD1 \| Protein of unknown function (DUF3411) \| chr2:15856952-15858793 FORWARD LENGTH=432