barSeed - Barley Seed Development Database

Probe CUST_32560_PI390587928

Source Contig U35_17573

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32560_PI390587928	Hv_44K_v2	GCCAAACCAACTTCATGCATTCCGGGATGTCTTATATGGATTCTGTTCTTTCAGAAAAAA	1392	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.722	1.893	1.039	0.880	0.556	0.426
Raw	60.332	94.866	49.365	65.874	14.650	12.486

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57883.4	1232	2e-24	1025 - 1084	100	60 / 60	plus	ABC11316 ABC11317 ABC49874
Harvest35	U35_17573	1765	3e-25	1393 - 1452	100	60 / 60	plus

Contig Sequence (1765 bp)

>U35_17573 1765 Hv_44K_v2
CCTCCCTCCTCCCCCTCCTTCCCCGTCTCGTCGCCTCCACTCCACCAGTCCACCGCCGCC
GCCACCGCCACCGTCGCCGTCGCCGCCTCCGCCTAGGGCAGAGGGATGCTCATGGAGCTC
TCCAGGATCCGGACCTTCGAGAAGCGCCTCATCCGGCCGCTCCTCTCCCTGCCGTCGCGC
TCCAGGGCGTTCCAGACCCTGGCCCGCTGCTCCCCTCCGCCGCCCCGCGCCCCCTCCCTC
CTCCTCCTGCTCCGCACGCGCCACATCGCTCCCCATCAGCAGGTCTTCTTGGGCGTGTTA
GGCATGCTTATGATGCTCTCCCGAGCAGTGTTTTTGAAGCTGAAAGGCCAGGATACAGTT
TTTCCATTCAACAACGGCTCGGATCATACCTTCTCAAGGGATTTTTATATGGTGCAGTTG
GATTTTCTTGTGGTCTCGTTGGCCAAGGCATTGCGAACTTGATAATGACTGCAAAGCGGA
GTGTAAAGAAGTCAGAGAATGATGTACCTGTTCCACCTCTTCTAAAAACTTCTGTTTTGT
GGGGTGCGTTCCTTGGTGTCTCTTCCAACACCCGTTATCAGGTAATTAATGGGCTTGAGC
GCTTGGTTGAGGCTTCGCCTCTTGGCAAGCGTGTCCCGGCTGCTTCTTTGGCATTCACTG
TCAGCGTGCGCTTTGCAAATAACGTCTATGGAGGAATGCAGTTTGTGGATTGGGCCAGAA
TGAGTGGTTGTCAATGAGGTGCATTGCATCCATGTTTTTCATGTTACCATCCTGATTCTG
TTGTATGTGATCTGCTGTTTGATATAGAAATGATAGTTGCCGAATTTGCTCTCTCGGAGT
TAAAGATTTGATGCCGATATTGGCAACAGCTTGGCTGCAGAATTCCAAAAATAAACATGA
AGGTGCTCCGCAGATTGGTTGGAGTCTTGATATGTTAGATTATGTTAGGCTGTTAGAAAG
TGCTATCGTAAATGAATCAGGAAGAGGCTTGGTATAACTGTTGAAATTCAACCATGTCCA
AGTGCTTAGTGATTTGTAGCTCCAGCAATCAGAAGAGTTTAAATGGTCTGTTCCTCTTGT
CTAAGATTTCGTGATATTGATTTGGACTGGGGTAGTTGAATCAGTTTTAGCATGTCTTCT
ATCAACGCCTAGGTATCCTAACCTGGCGTGCTGTCCAAATTTGGCTACGAGTATACCATA
TATTTTGACCCTACCACATCAACTATCCTTCTGGATGCCTGTTATGTAACTGTAAGATGA
AAAATACTGGGCAAGGAAATAAAGTAATCAAGACAGCGGAAGAAAGTTTCGGTGAAGAAG
ACCTCAAATCCCCAAAATACGACCAGAGTAGTGGTGAATTGCTTTACGGTGAAGATTGTA
GGTCGCAAACAAGCCAAACCAACTTCATGCATTCCGGGATGTCTTATATGGATTCTGTTC
TTTCAGAAAAAAAAAACACTTGAAGAAAGTTGACTAAGGGCATCTCCAATGCAGTCCCGT
CACTATCCGCCCGTCGACATGGACCCGAGGGCCAGCCATCCTTTGAAACGTCCGCCTAGA
TCTTTCTTCGAAAAAGAGCGTTTTATTATTTTATTTTTTAAAATATTACATCCGGTCTTT
GCATGACTGGCCTAGATTTTTTTTTAAAAAGAAGCATTTTATTATTTAAAAGATTTAAAC
AATACATACATAACTAAGATGTACACAATAGGAGAATATCTTCTCACACAAACAAAAAAT
AAAAAGGTGAGAAACAAAAAAAAAA

Homology of Contig U35_17573 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g13590.1	444	5e-84	protein\|expressed protein
Brachypodium v1_2	Bradi1g53580.1	428	2e-89
Arabidopsis v10	AT2G37860.3	432	1e-69	\| Symbols: LCD1 \| Protein of unknown function (DUF3411) \| chr2:15856952-15858793 FORWARD LENGTH=432