barSeed - Barley Seed Development Database

Probe CUST_3255_PI390587928

Source Contig U35_10937

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3255_PI390587928	Hv_44K_v2	TGGTGGACAACTACCTGGCAGAGGTCGCGTCCGACGCCAACCTGAAGCCCGCCAAATTCT	491	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.398	0.382	1.613	2.256	0.997	1.597
Raw	3.079	5.285	27.756	58.156	8.815	17.289

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375511	2332	2e-24	1339 - 1398	100	60 / 60	plus	ABC18771
MLOC	MLOC_3906.4	2140	2e-24	1774 - 1833	100	60 / 60	plus	None
MLOC	MLOC_3906.3	1924	2e-24	1668 - 1727	100	60 / 60	plus	None
MLOC	MLOC_3906.5	1977	2e-24	1297 - 1356	100	60 / 60	plus	None
MLOC	MLOC_3906.1	2312	2e-24	1752 - 1811	100	60 / 60	plus	None
MLOC	MLOC_3906.2	2204	2e-24	1644 - 1703	100	60 / 60	plus	None
MLOC	MLOC_30372.1	1092	3e-21	126 - 185	97	58 / 60	minus	None
JLOC1	JLOC1_2355.1	2157	8e-25	1600 - 1659	100	60 / 60	plus
Harvest21	ABC22599	921	3e-25	492 - 551	100	60 / 60	plus
Harvest35	U35_10937	921	3e-25	492 - 551	100	60 / 60	plus

Contig Sequence (921 bp)

>U35_10937 921 Hv_44K_v2
GGCACGAGGCTGAATAGTGCCATACGCCAAGGCCACCCTTCCCGGGCTGTCGAGGTCCAT
GCGGTGGCGCCGCTCGTCCGCGCCGGTGTCTTCCGAGGTGGAGCAGAAAGACCTCCTGGA
GGCGGTGGTCGCGAGCCTCCCCGCGGACAAGGGCTCGGGGAGCGTGGTGACCGCGAAGTT
CCTGTTCGCTTTGTTTTTGACGGCGCACATCCTGCGCGCTTCCGACGCGGGNCGGGCNGC
GATCGAGCGGCAGGCCGCGACGCAGCTGGAACAGGCAACAGTGGAAGACGTGCTCATCCC
GAGCTACTCCGGCGCCGCGGAGACGCTCTACGACGTGGACTGCGTCGAGCGGGTGGTCAG
GCACTTCCTGGCCGAGGAGGAGCTCGGCGAGGACGAGGCGTCGTCGTCAGCTGCAATCGC
CGAGGAGGAAGCGGCGGCGGCGACATCGGCGTCGCGTCCGTCGGCCGTGGCAATGGTGCA
GGTGGGCAAGCTGGTGGACAACTACCTGGCAGAGGTCGCGTCCGACGCCAACCTGAAGCC
CGCCAAATTCTGCGAGCTCGCGCTGGCACTGCCGGACCACGCCCGCATCTACGACGATGG
CGTCTACCGCGCCGTCGACATCTACCTCAAGGCGCATTCGCGGCTGACGGTGGAGGAGCG
GGACAGGGTGTGCGGCGTGGTTGACTGCAGGAAGCTGACGGTGGAGGCGTGCACGCACGC
GGCGCAGAACGAGCAGCTCCCGCTGCGCGCGGTGCTGCAGGTGCTCTTCTTCGAGCAGCT
GCAGCTCCGCCGCGCCATCGCTGGCTCGCTCCTGGCGTCCACGGCTTCCCCGCGAGCGCG
GCATCCGCAGCGTCCGGCGGCGGCTCTGCGTCACGCGGCTGGCCCGAGCGAGACGTGGCG
GGCAACGGCGGTGCAGGACAG

Homology of Contig U35_10937 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52880.1	668	5e-119	protein\|BTBN9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
Brachypodium v1_2	Bradi1g07457.1	682	1e-72
Arabidopsis v10	AT5G66560.1	668	3e-71	Phototropic-responsive NPH3 family protein \| chr5:26564368-26566662 FORWARD LENGTH=668