barSeed - Barley Seed Development Database

Probe CUST_32558_PI390587928

Source Contig U35_17574

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32558_PI390587928	Hv_44K_v2	GAGATCATCGGACGAACCACACTCTTTTGCCCGAGAGTTTTTTCATTCCATTTCTTCACC	1046	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.970	2.034	1.085	0.774	0.337	0.352
Raw	1389.380	2281.391	1044.916	1196.847	179.321	202.407

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC14796	1523	3e-25	1379 - 1438	100	60 / 60	plus	ABC14796
Harvest35	U35_17574	1191	3e-25	1047 - 1106	100	60 / 60	plus

Contig Sequence (1191 bp)

>U35_17574 1191 Hv_44K_v2
CTCCAGGGCAGCAACAGCAACGACGACGAGGGCCTCCCGCCCGCGCCCCTCCCGCCGCCG
CCCGAGGAGCTCGGCTCCGACGACGACGCCTACTACCAGGAGCAGCTGCTCGAGTACACG
CAGGAGGACGAGACCCGCCTCGTCCCCGTCAAGGCCTACTTCCCCTGCACCAGCATCAAC
CTCAAGAGCCTCCAGTCGCAGAATTCCTTCAATGTCATCCCGCCCACCTCGCGTGCCACC
AATTATGTCGTCCTCAGATACTATGATGTCAAGGGAGACCCAGAGGGTTTTAAGACTGGT
GTCATAGATGAGAGCCATTGCCACTATATGGTAGTTTTCCAATATGGGTCCATCGTGCTG
TTCAATGTTTCTGACCATGAAGCAGATGGATACCTAAAAATTGTAGAGAGGCATGCTTCA
GGGTTACTCCCAGACATGAGGAAAGATGATTACGCCGTTGTTGAGAAGCCTACGTTGGAG
ACATGGATGGAGGGTGGCCTTGATTTTATTATACTCAAGGATCTAAGTATCGATGGTATT
CGGACAATTGGAAGTGTACTTGGTCAGAGTATCGCTCTTGACTATTATATCCGGCAAGTG
GATGGAATGGTTGCCGAGTTCACGGATATAAATCGTGGAATGGAGAAAACTGGTACCTTC
ACTATGGAGAGGAAAAAACTTTTCCAGTTAGTCGGAAAGGCTAACTCGAACTTGGCAGAT
GTCATTCTTAAGCTTGGACTTTTTGAGAGGTAAGACATTGCTTGGAAGAACGCAAACTAT
GCTCAGATCTGGGAGTTCCTCCGGGACGAATACGAGCTAACCCAAAGATTCGGAAACCTC
GATTTCAAGTTGAAATTCGTTGAGCACAACATCCGGTTCCTCCAGGAGATCCTCCAGAAC
AGGAAGTCGGATTTCCTGGAGTGGCTGATCATCATCCTGATCAGCGTGGAGATCTTGATA
TCTGTGTATAACATTGTCCAGGAGCAGATGTAGAGCGATAGCGAGATACCCAACACGGTT
GTTGGTGAGAGCGAGCGAGAGAGATCGAGATCATCGGACGAACCACACTCTTTTGCCCGA
GAGTTTTTTCATTCCATTTCTTCACCCCCGGTAGGAGCCCCCCCTGTAAAGAATGCTTAA
TTCGGACCTNCTGGTTCACGTAGCTCGCTTTGGCCGGAGCTCGTCGTGTGA

Homology of Contig U35_17574 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g49410.1	395	0.0	protein\|uncharacterized ACR, YagE family COG1723 containing protein, expressed
Brachypodium v1_2	Bradi1g16500.1	400	0.0
Arabidopsis v10	AT5G13610.1	402	2e-123	Protein of unknown function (DUF155) \| chr5:4383073-4384808 FORWARD LENGTH=402