barSeed - Barley Seed Development Database

Probe CUST_32539_PI390587928

Source Contig U35_29555

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32539_PI390587928	Hv_44K_v2	CAATAAGCTATGATCGGTCTGTCGACAGTTTGTGAAGCAGACCCGTTTCAACCCAAAAAA	102	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372063	2285	3e-22	2213 - 2268	100	56 / 56	plus	ABC28882
MLOC	MLOC_72962.3	2109	3e-22	97 - 152	100	56 / 56	minus	ABC28882
MLOC	MLOC_72962.5	1788	3e-22	13 - 68	100	56 / 56	minus	ABC28882
MLOC	MLOC_72962.1	2065	3e-22	119 - 174	100	56 / 56	minus	ABC28882
MLOC	MLOC_72962.2	2083	3e-22	119 - 174	100	56 / 56	minus	ABC28882
MLOC	MLOC_72962.4	1994	3e-22	97 - 152	100	56 / 56	minus	ABC28882
JLOC1	JLOC1_48562.4	1950	1e-22	1828 - 1883	100	56 / 56	plus
JLOC1	JLOC1_48562.3	1932	1e-22	1810 - 1865	100	56 / 56	plus
JLOC1	JLOC1_48562.2	1221	1e-22	1099 - 1154	100	56 / 56	plus
JLOC1	JLOC1_48562.1	1239	1e-22	1117 - 1172	100	56 / 56	plus
Harvest21	ABC28882	165	3e-25	103 - 162	100	60 / 60	plus	ABC28882
Harvest35	U35_29555	165	3e-25	103 - 162	100	60 / 60	plus

Contig Sequence (165 bp)

>U35_29555 165 Hv_44K_v2
CTACTGGGTATTTGTTTGCGGCACTCTGTTGTGTGTACATAGTTTCTCCGAGGAGAGTCC
TCGGAGAAACGCTGTTTTTGGCAAGGGATTGTAACATGTTATCAATAAGCTATGATCGGT
CTGTCGACAGTTTGTGAAGCAGACCCGTTTCAACCCAAAAAAAAA

Homology of Contig U35_29555 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None