barSeed - Barley Seed Development Database

Probe CUST_32538_PI390587928

Source Contig U35_29556

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32538_PI390587928	Hv_44K_v2	TCTTCACCGGCGGATTCAACAGCGTCACCCGCGCCCACCTCATGGACAAGGTCATCGACT	251	GeneList: black MasterList: Transferase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.374	0.439	1.015	1.015	1.392	1.661
Raw	11.987	19.772	42.411	60.532	31.539	43.111

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364058	4290	2e-24	702 - 761	100	60 / 60	plus	ABC50821
JLOC1	JLOC1_30810.1	335	4e-23	258 - 317	98	59 / 60	plus
JLOC1	JLOC1_3797.1	3836	2e-21	492 - 551	97	58 / 60	plus
Harvest21	ABC28883	474	3e-25	252 - 311	100	60 / 60	minus
Harvest35	U35_29556	474	3e-25	252 - 311	100	60 / 60	minus

Contig Sequence (474 bp)

>U35_29556 474 Hv_44K_v2
GGGCCTGGCACCGCCGTCGGCGGCGCCGACCAGGTCGTCCATCTCGGTGGCCTTGTAGGG
CTCCTTGCAGCCGGGGCAGAGGGCGCCGGCGTTCTTGACGGCGTCGCCGAAGCACTCGGC
GCAGATCTTGAAGTCGCACTCGCAGGGCAGGATGTCCTGGCCGCGCTCGTCGCTCATGAC
CTTGGCGTCGCAGCCGTTGACGGCGCAGGAGGAGCCCTTGGAGCCGGCCATCTGCGGGTG
GCTGGCCTCGGAGTCGATGACCTTGTCCATGAGGTGGGCGCGGGTGACGCTGTTGAATCC
GCCGGTGAAGAGCGAGTTGGAGACGTACTGCTCCTCGACCCGCGCCGAGATGGCCGGGTC
CATGGGCTGGTTGTCGGGCGTGGCCGGGATGTGCACGTGGTAGCTGAGGAACTCCTCCCG
GTCCGGCGAGAACCCGCCGCCGCCGCCCGCGAGGTCGGTGTTGGCCAGCTCGCT

Homology of Contig U35_29556 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g02180.1	1171	3e-79	protein\|CSLD2 - cellulose synthase-like family D, expressed
Brachypodium v1_2	Bradi1g50170.1	1183	7e-94
Arabidopsis v10	AT5G16910.1	1145	4e-66	\| Symbols: ATCSLD2, CSLD2 \| cellulose-synthase like D2 \| chr5:5561679-5565290 FORWARD LENGTH=1145