- Probe CUST_32537_PI390587928
- Source Contig U35_43849
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_32537_PI390587928 | Hv_44K_v2 | TTTAACCCTTTTTGAACAGGTCAATCTGCCAGCATTTAGTTGTGTTGGTGTTTCAAAAAA | 11 | GeneList: blue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.915 | 1.924 | 1.374 | 0.864 | 0.445 | 0.312 |
Raw | 102.855 | 167.920 | 99.971 | 99.164 | 17.628 | 13.821 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC41036 | 220 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC41036 |
Harvest35 | U35_43849 | 220 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (220 bp)
>U35_43849 220 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAAACACCAACACAACTAAATGCTGGCAGATTGACCTGTTCAA AAAGGGTTAAAAAACGGTTTTGATTTACATGGGGCAAAATTTCCCCTCTTTTTCAAACTA CCAAATCCACATTTTAACAAGCCAACATGGCCATTTACATTATTTCCATTTTAACTTTTT AACCAATGAATTTATCAAGGGATGCCTGTTGTCCCCCTAA
Homology of Contig U35_43849 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |