- Probe CUST_32531_PI390587928
- Source Contig U35_31872
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32531_PI390587928 | Hv_44K_v2 | TTCATCACCTTCGGCTTCGCCTGCACCCCGCTCTACTTCGTGTGGGAGAAGCTCATCGGC | 445 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372286 | 2056 | 2e-24 | 1103 - 1162 | 100 | 60 / 60 | plus | ABC08128 |
| MLOC | MLOC_59603.3 | 1196 | 2e-24 | 260 - 319 | 100 | 60 / 60 | plus | ABC08128 |
| MLOC | MLOC_59603.2 | 1264 | 2e-24 | 328 - 387 | 100 | 60 / 60 | plus | ABC08128 |
| MLOC | MLOC_59603.1 | 1329 | 2e-24 | 360 - 419 | 100 | 60 / 60 | plus | ABC08128 |
| MLOC | AK376258 | 1945 | 7e-23 | 1051 - 1110 | 98 | 59 / 60 | plus | ABC08128 ABC17639 |
| MLOC | MLOC_34872.2 | 976 | 7e-23 | 723 - 782 | 98 | 59 / 60 | plus | ABC08128 |
| MLOC | MLOC_34872.1 | 1594 | 7e-23 | 1335 - 1394 | 98 | 59 / 60 | plus | ABC08128 |
| MLOC | MLOC_34872.3 | 557 | 7e-23 | 360 - 419 | 98 | 59 / 60 | plus | ABC08128 |
| JLOC1 | JLOC1_38802.2 | 1230 | 8e-25 | 254 - 313 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38802.1 | 1333 | 8e-25 | 357 - 416 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22532.2 | 677 | 4e-23 | 418 - 477 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_22532.1 | 1465 | 4e-23 | 1206 - 1265 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC43731 | 605 | 1e-23 | 281 - 340 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_31872 | 630 | 3e-25 | 446 - 505 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45202 | 605 | 1e-23 | 281 - 340 | 98 | 59 / 60 | plus |
Contig Sequence (630 bp)
>U35_31872 630 Hv_44K_v2 ATACATCTTCGGCGCCTGCTGCGCCACCACCGTCTTCATCCCCTCCTTCCACAACTACCG CGTCTGGTCCTTCCTCGGCCTCCTCATGACCACCTACACCGCCTGGTACATCGCCGTCGC CTCCCTCATGCACGGCCAGGCCGACGGCGTCAAGCACTCCGGCCCCACCACCATCATGCT CTACTTCACCGGGGCCACCAACATCCTCTATACCTTCGGGGGCCACGCTGTCACCGTGGA GGTGATGCACGCGATGTGGCGGCCGCAGAAGTTCAAGGCGATCTACCTGCTGGCGACGCT GTACGTGCTCACGCTGACGCTGCCGTCGGCGTCGGCGGCGTACTGGGCGTTCGGCGACGA GCTGCTCACGCACTCCAACGCGCTCTCGCTGCTCCCGCGCGACGCCTGGCGCGACGCCGC CGTCATCCTCATGCTCATCCACCAGTTCATCACCTTCGGCTTCGCCTGCACCCCGCTCTA CTTCGTGTGGGAGAAGCTCATCGGCCTCCACGACTGCCGCAGCCTCTGCAAGCGCGCCGC CGCCAGGCTCCCCGTCGTCGTCCCCATCTGGTTCCTCGCCATCATCTTCCCCTTCTTCGG NCCCATCAACTCCGCCGTCGGCTCGCTCCT
Homology of Contig U35_31872 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g05690.1 | 548 | 1e-129 | protein|transmembrane amino acid transporter protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g21090.1 | 523 | 5e-137 | |
| Arabidopsis v10 | AT2G21050.1 | 483 | 2e-124 | | Symbols: LAX2 | like AUXIN RESISTANT 2 | chr2:9034289-9036439 FORWARD LENGTH=483 |