barSeed - Barley Seed Development Database

Probe CUST_32530_PI390587928

Source Contig U35_31873

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32530_PI390587928	Hv_44K_v2	CGTCGACTACCGCGGCGCCGGTGAGGTGGCAGTCTCCTACTCCGGTGTGCGTCTTGCGGC	526	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.931	2.318	2.150	1.035	0.417	0.565
Raw	76.764	307.947	235.716	179.421	25.478	37.804

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72620.1	1221	2e-24	549 - 608	100	60 / 60	plus	None
JLOC1	JLOC1_48308.1	992	8e-25	356 - 415	100	60 / 60	plus
Harvest35	U35_31873	586	3e-25	527 - 586	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_31873 586 Hv_44K_v2
TCGATCACACACTCTTCTCCCCGGTTCTTCTCGAGCTCACGTCACCACGACCCGGGCGCG
TCATGGCCGACCGCGTCCACCCCATCCCGGCGCCGCCACATCCCGCGTCCCCTCTGCCGC
CGCCGGACCAGGAGGACGCGGCGGCCACGGAGACCACACCTCTCCACCCGACCTTCTACG
GCCCGCCGGCGCCGCCGCCCGGGACGTACATCGTCCAGATTCCCAAGGACCAGGTCCTCC
GCGTGCCGCCCCCCGACCGGGCCCGCCGGTACAAGAGCCTCGCGGAGCGTCCGGTCCGGC
GCCGTCGCCTGCGCCGCGCCTGCTTTGGCGCCTGCGGGGCCGTGCTCTTCCTTGCTATCT
CCGCCGCCGTGTTCGTGGGCGCTGTGTACCTCGTCTTCCGCCCCCGCGCGCCCGCCTTCT
CCGTCGCCTCCCTCTCCATCCGTGGCCTTGACGCGGTCGCCCCTTCGCTCTCCCCGGAGC
TCGACGTCACCTTGCGCGCGGACAACGGCGCGAACAAGAAGGTCGGCGTCGACTACCGCG
GCGCCGGTGAGGTGGCAGTCTCCTACTCCGGTGTGCGTCTTGCGGC

Homology of Contig U35_31873 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g03600.1	277	3e-55	protein\|harpin-induced protein 1 domain containing protein, expressed
Brachypodium v1_2	None
Arabidopsis v10	None