barSeed - Barley Seed Development Database

Probe CUST_3252_PI390587928

Source Contig U35_22910

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3252_PI390587928	Hv_44K_v2	AGATAATGAAATGTTTGGTTCAGTTATGGAACTGCGTTGAGACAACTTTCCCTCAAAAAA	561	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61916.1	2249	9e-22	122 - 176	100	55 / 55	minus	ABC18723
JLOC1	JLOC1_40483.1	2165	5e-22	36 - 90	100	55 / 55	minus
Harvest21	ABC18723	632	3e-25	12 - 71	100	60 / 60	minus	ABC18723
Harvest35	U35_22910	632	3e-25	562 - 621	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_22910 632 Hv_44K_v2
GCACGAGGCTCATGTGCGCCATGAACTACACGACGGCGCAGATCAAGACCGTGGCGCAGT
CGTCGGCCCCCGTGGACTGCGTCGGTGCATCGCTCGATCTCAATTACCCGTCCTTCATCG
CCTACTTTGACACGGCCGGGGAGAAGACATTCGCCCGGACCGTGACCAACGTGGGCGACG
GGCCAGCGAGCTACATCGCCACAGTGGAGGGACTGGACGGGCTGAAGGTGAGCGTCGTGC
CAGACAGGTTGGTGTTCGGCGGGAAGCACGAGAAGCAGAGGTACAAGGTCGTGGTTCAGG
TGCGGGACGAGCTAATGCCCGAGGTAGTGCTGCATGGGTCGTTGGCGTGGGTGGACGACA
ACGGCAAGTACACGGTGAGGAGCCCCGTCGTGGTGACCACCTCGTCTGTGCTATAGGATT
CCTACGTGCACACTGCAAAGATCAGTATATGTACGCGCATCAAGTCGTTGGAGGAAAGGT
AATCGAGCGAGACAGTGAGGTAAGTGAAAGCTTGTGATCCAACAACTGACCATACGGCAA
CACACTACGGTCATATGGTATAGATAATGAAATGTTTGGTTCAGTTATGGAACTGCGTTG
AGACAACTTTCCCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22910 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None