barSeed - Barley Seed Development Database

Probe CUST_32526_PI390587928

Source Contig U35_31875

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32526_PI390587928	Hv_44K_v2	TTTGACTACTTCGTGGTCCTAGACTTCGAGGCGACGTGCGAGAAAGGCGCGCAGATCTAC	172	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3356.1	3766	2e-24	2770 - 2829	100	60 / 60	plus	ABC08212 ABC08213
MLOC	MLOC_3356.2	3584	2e-24	2588 - 2647	100	60 / 60	plus	ABC08212 ABC08213
MLOC	MLOC_3356.6	3034	2e-24	2845 - 2904	100	60 / 60	plus	ABC08212 ABC08213
MLOC	MLOC_3356.3	3713	2e-24	2739 - 2798	100	60 / 60	plus	ABC08212 ABC08213
MLOC	MLOC_3356.4	3340	2e-24	2366 - 2425	100	60 / 60	plus	ABC08212 ABC08213
MLOC	MLOC_3355.2	1447	2e-24	591 - 650	100	60 / 60	plus	None
MLOC	MLOC_3355.3	1639	2e-24	783 - 842	100	60 / 60	plus	None
MLOC	MLOC_3355.4	1470	2e-24	575 - 634	100	60 / 60	plus	None
MLOC	MLOC_3355.1	1731	2e-24	830 - 889	100	60 / 60	plus	None
JLOC1	JLOC1_2013.2	1141	8e-25	174 - 233	100	60 / 60	plus
JLOC1	JLOC1_2013.1	1738	8e-25	771 - 830	100	60 / 60	plus
JLOC1	JLOC1_2014.8	3731	8e-25	909 - 968	100	60 / 60	minus
JLOC1	JLOC1_2014.7	3581	8e-25	909 - 968	100	60 / 60	minus
JLOC1	JLOC1_2014.6	4068	8e-25	909 - 968	100	60 / 60	minus
JLOC1	JLOC1_2014.5	2986	8e-25	909 - 968	100	60 / 60	minus
JLOC1	JLOC1_2014.4	3291	8e-25	909 - 968	100	60 / 60	minus
JLOC1	JLOC1_2014.3	3116	8e-25	909 - 968	100	60 / 60	minus
JLOC1	JLOC1_2014.2	3331	8e-25	909 - 968	100	60 / 60	minus
JLOC1	JLOC1_2014.1	3420	8e-25	909 - 968	100	60 / 60	minus
Harvest35	U35_31875	468	3e-25	173 - 232	100	60 / 60	plus

Contig Sequence (468 bp)

>U35_31875 468 Hv_44K_v2
TACTGGCCACCCGCTGCTCGCTTCCCGAGTTCATCCTCCTCCTCCCATGCATCTCAGAGG
ATCCATCGGGTCCATGGTCACCTCCAGCAACTCCGGGGTGCCGTCACCGGACCCGGAGGC
AACGACGGGCAGCACGGCGCGGCAGCCCCAGCCCCAGCCCCAGCCCCAGGCGTTTGACTA
CTTCGTGGTCCTAGACTTCGAGGCGACGTGCGAGAAAGGCGCGCAGATCTACCCGCAGGA
GATCATCGAATTCCCCTCCGTCCTCGTCGACGGTGCCACCGGCAACCTCGACTCCGAGTT
CCGCACCTACGTCCGCCCGCGGCACCACCCGGCGCTGACCGACTTCTGCAGGGACCTCAC
CGGCATCCCGCAGGCGGACGTCGACGGCGGCGTGGAGCTGGCCGAGGCGCTCCGCATGCA
CGCCGCGTGGCTGCAGGCCTCGGCATGGGCCCGGAGCGGCGGCTGCTT

Homology of Contig U35_31875 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None