barSeed - Barley Seed Development Database

Probe CUST_32525_PI390587928

Source Contig U35_17582

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32525_PI390587928	Hv_44K_v2	CTCAATCCAACAATTATGCACTATCGTGGTGCTCTATCAAAGAAAAGGCAGTTATTTTTA	1052	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.300	1.666	1.067	1.239	0.728	0.946
Raw	3.367	47.343	24.540	45.130	8.712	12.948

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_48487.1	1223	3e-24	9 - 67	100	59 / 59	minus
Harvest35	U35_17582	1139	3e-25	1053 - 1112	100	60 / 60	plus

Contig Sequence (1139 bp)

>U35_17582 1139 Hv_44K_v2
TAGCTGCATAGGAGTAGTACGCTAGTCGGCGGTCGGCATGGAGGAGGAGGAGGAGGAGCT
GACGCTGGTGGGTTACTGGTCGAGCCCGTTCGCGCTGCGCGCGCGCTACGCCCTCAACCT
CAAGGGCCTCCCCTACGCGTACGTGGAGGAGGTGGGGCTCTTCGACGGCAAGAGCCCGCT
CCTCCTCGCGTCCAACCCCGTGCACAAGAGGGTGCCGGTGCTCATCCACAACGGCAAGCC
CGTCCCCGAGTCACAGCTCATCGTGCAGTACGTCGACGAGGCTTTCCCGGCTAGCTCCCC
GCGCTTCCTCCCTTCCGACCCGCACGAGCGCGCCGTCGCTCGCTTCTGGGCCTCCTACGT
CGACGGCGAGCTGCTCAGCGCGTGGCTGCCCGTCTACGGCGGGCGCACCGGCGAGGAGAG
GGCTCAGGCGGCGGGGCGGGTCGGCGCCGCCCTCGAGACGCTGGAGCGGGCGTTCGGGGA
GTGCTCCAAGGGGAAGGGCTTCTTCGGCTGGGACACGGTGGGGCTCGTGGACGTCGTGCT
CGGCGGCTTCGTCGGGTGGCTCAAGACGTCCGAGGCCATGTGCGGCGTGAGGCTGCTTGA
CGCCGCTGCGACGCCGCTGCTGGCGGCCTGGGCCGAGCGGTTTCGCGCGCTCCACGGCGT
CAAGGAGGTGATGCCGGATCCGCAGAGGCTGTTGGAGTACAACCTCATGAGGCGAGCTCG
CCTCGGGCTGCCGCTGACGCCGCGGCCGCCGCAGCAATAGATATAAATCTCTCTATATAA
ATAAGGCTAGGATCAGGGCTACTCCTACACCGCGTGCAAATAGCCTGTATCAATAACCGA
GCATATATCCCTACTCTAGTAGGGCGTGTATTCTACCTTGTGTAATGCACTTTCTCTACC
TTAACATGCGTAATTTAGTGAAAAAAAAAAAAAAAAATGGTGTACGGGAGTAATTTAGTG
AATACCGTTTGTTCCTAATGGTGTACGGGTTGAGATTCTCTGCTGTAACATCCTTGGCAC
TGATATTGACAACATCATGTGCTGAGTTTGATCTCAATCCAACAATTATGCACTATCGTG
GTGCTCTATCAAAGAAAAGGCAGTTATTTTTAATTCCTATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17582 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g38160.1	233	9e-63	protein\|glutathione S-transferase, putative, expressed
Brachypodium v1_2	Bradi3g31827.1	255	1e-93
Arabidopsis v10	None