barSeed - Barley Seed Development Database

Probe CUST_32521_PI390587928

Source Contig U35_17585

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32521_PI390587928	Hv_44K_v2	CTGAACTCGAAGTTGGTGTGAGATGTGAGAAATGGTAACATTATTGTCCATTTTTGTTAA	1687	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365087	1932	6e-24	1795 - 1853	100	59 / 59	plus	ABC08353 ABC08354 ABC11158
JLOC1	JLOC1_14479.1	1203	3e-24	942 - 1000	100	59 / 59	plus
Harvest21	ABC08353	586	3e-25	16 - 75	100	60 / 60	minus	ABC08353
Harvest35	U35_17585	1762	3e-25	1688 - 1747	100	60 / 60	plus

Contig Sequence (1762 bp)

>U35_17585 1762 Hv_44K_v2
GAGGCCTGCTACGCCACGCCACGCCAAAGACACTCGGAATCGGGAGGTAAACCCCTCCCC
CCACCACCACTACCGGTAATAGTCCGTCTCCCTTCCTCCGCCCCGCCCCCCAGCTGCCCG
CCAGCCCGTCGCCCGCCGCGCCTCCCCAACTCCTCGCCTCGCCGCCGGAGCGACGGAGGC
CGAGCCCGATCGCGGATCGGGTGCCCCCAAAGTTCGGCCGCCCTCCCGGGTTGACCCCTC
GCAGTACCCAGAGGCAGATAGATAGGAAGAAGTAAAATAAAAGGAGGTCATTATGCGCCG
ATGGTTTTGTTGCAGTCAGTTTCATGCTTCATATCGTGAACATGAACATGAATTTCCTTC
CAGCCCAGATGAGAAAGAAGGAAATGGTTTTGATACCAAAAGTGATCCAACAAAAGCACC
TCCTCCCATTGAGATACCTGAATTGTCACTTGATGAACTGAAAGAAAAGACCGACAACTT
TGGGTCAAAAGCTTTGATCGGTGAAGGATCATACGGGAGAGTATATTATGCTATTCTAGA
CAGCGGAAAACATCTTGCTGTTAAAAAGCTTGATACCTCAGCAGACCCTGAGCCTGATAA
TGAATTTCTGACACAGCTCTCGATTGTGTCGAGATTAAAGCATGAAAATTTTGTGGAAAT
GCTTGGCTACTGTGTGGAAGGAAATCAACGTCTGGTAGCCTATGAATTTGCTACGATGGG
TTCTCTACATGATATTTTGCATGGAAGAAAAGGTGTCCCTGGCGCACAGCCTGGCCCAGC
ACTTGACTGGATGCAGCGAGTCAAAATTGCTATAGATGCTGCTAAAGGGCTGGCATATCT
TCATGAGAAGGTTCAACCTTCGATAGTCCATCGGGACATACGGTCTAGCAATGTCCTTCT
ATTTGAGGACTACAGAGCGAAAGTCGCAGATTTTAATCTTTCAAACCAGTCTCCTGATAT
GGCTGCTCGTTTGCATTCCACCCGTGTGCTTGGAACCTTTGGCTATCATGCTCCCGAGTA
TGCCATGACTGGCCAGCTAACTCAGAAAAGTGATGTATATAGCTTTGGAGTTGTTCTTTT
AGAGCTTCTAACAGGAAGGAAACCAGTAGATCATACAATGCCTAGAGGCCAGCAGAGTCT
GGTTACATGGGCGACGCCTCGTTTGACTGAGGATACAGTGAAGCAATGTATTGACCCAAG
GTTGAAGGGAGAGTGCCCCCCGAAAGGCGTTGCCAAGCTTGCGGCGGTGGCTGCCCTCTG
CGTGCAGTACGAATCGGAGTTCAGACCCAGCATGAGCATCGTCGTCAAGGCGCTCTCGCC
CCTTCTTCAGCAGAAACCTCAAGCTCCACCAGCGGCTGCTCCCAACACAGCGACTTCAGA
CGCCTGACCTACCCAGTTCAACAAACAAGGATGTAAAAAAAAGAGAGTGCCAAGACACAT
GTTGTTCTGTTTTTACCGAGAGTACCACCGTCGCTTTGCTGAGTTCTAGAACGGACCGTG
TGATTCTGCCGAGTGATGCGCTCTTGCTGCATTTGTTGGCGGTCACCTTAATAAGCTGTG
TTCTGGGTGGTATATATGGATATGCTGTAACATGGGAACTTGGGAAGGTTGTAGTTGGTC
CGTGGCTTGATGTTTCTGGGTTTGCCGTTGTGATTTTGAGCCGACACCCATTGATTTGTA
TAACCTGCTGAACTCGAAGTTGGTGTGAGATGTGAGAAATGGTAACATTATTGTCCATTT
TTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17585 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33860.1	362	0.0	protein\|protein kinase, putative, expressed
Brachypodium v1_2	Bradi4g35050.1	365	0.0
Arabidopsis v10	AT3G59350.1	408	1e-177	Protein kinase superfamily protein \| chr3:21932930-21934883 FORWARD LENGTH=408