barSeed - Barley Seed Development Database

Probe CUST_32509_PI390587928

Source Contig U35_4827

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32509_PI390587928	Hv_44K_v2	GATATAACGGACGCAAATGTGTAGTATTGAATTTGAATGGAAGATAGAAGCTGGTGTTTT	1322	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77271.1	2460	2e-24	2373 - 2432	100	60 / 60	plus	ABC10960
JLOC1	JLOC1_51536.1	2494	8e-25	2373 - 2432	100	60 / 60	plus
Harvest21	ABC10960	1035	3e-25	969 - 1028	100	60 / 60	plus	ABC10960
Harvest35	U35_4827	1389	3e-25	1323 - 1382	100	60 / 60	plus

Contig Sequence (1389 bp)

>U35_4827 1389 Hv_44K_v2
GGGCCCCCTTGGAGTCCTTCTTCTGAAACCCTGAGGTTCTGCTGAAACTTACGGCTGTGA
AGTGGATGTTTGGAGTGCTGGAGTAATAATTTATATCTTGTTGAGTGGGGTCCCTCCATT
TTGGGATGAATCTGAGCAAGGGATATTTGAACAAGTTTTGAAAGGTGATCTTGATTTTTC
ATCCGAGCCCTGGCCCAGTATCTCAAAGAGTGCAAAGGATTTGGTTAGGAAAATGCTGAA
CCGTGATCCTGGAAAGAGATTGACTGCACATGAAGCTCTATGTCATCCTTGGGTTTGTGT
TGATGGAGTTGCTCCTGACAAGCCACTTGATTCTGCTGTCTTAACTAGATTAAAACAGTT
TTCAGCAATGAATAAACTAAAGAAGATGGCCCTTAGAGTAATTGCCGAGAATCTGTCTGA
AGATGAAATTGCAGGGTTGAGAGAGATGTTCAAAATGCTGGACACTGACAATAGTGGCCA
AATCACATTGGAGGAACTAAAAACTGGCTTGCAGAGAGTTGGTGCCAACTTAAAAGAGTC
AGAAATTGCAACTCTAATGGAAGCGGCGGATATTGATAACAGTGGGTCAATTGATTATGG
GGAGTTCCTTGCGGCAACATTGCATCTGAACAAGGTTGAGAGAGAAGATAATCTGTTTGC
AGCATTCTCATACTTCGATAAAGATGGCAGTGGTTACATTACTCAAGATGAACTGCAAAA
AGCATGTGAAGAGTTTGGTATAGGAGATGCACATCTTGACGATATTATCCGAGACATTGA
TCAAGACAATGATGGCCGGATCGACTACAATGAATTTGTAACAATGATGCAGAAGGGAAA
TAATCCACTAGGGAAAAAGGGACAAGGGCAGACGAGCTTTGGTCTTAGGGAAGCATTGAA
GATACGCTAGTGTACATTGTTTGGTCTATGTGCCCCAGTCATTTGCTATGCTAATGATAG
TGTGGCCTGAAGGATCCGCCCCCCCACGATCTGGACAATTCCTGTTCCAGCTAACCAACG
CAGGGCAGGATTACTGAACTGGGAAGCCAACTAAAGAAGGAATTCTCTAATGGAGTGAGC
AAAGAGAGATTCTAGATGATTGTGCCATTTTTCAATCAGAAGGGATCACCCTGCTTGTAG
ATTGCGTGTATCTAGTTTTGGCATTTCAAGCGATGGAGTGAGCAGACTGAATATCCGGTA
ACTACATCTGAGCATGAATTAGAGTACCGACGTTCAGTGACAGTGACTATAAAAATATAA
AAATGTATAGGAGAGAAAAATATGTAATTAGTAAAGCTCTTTATATGTCCACCGGCCACA
CTGATATAACGGACGCAAATGTGTAGTATTGAATTTGAATGGAAGATAGAAGCTGGTGTT
TTTTTTTTC

Homology of Contig U35_4827 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g06740.1	569	6e-176	protein\|CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g56970.1	568	0.0
Arabidopsis v10	AT5G04870.1	610	3e-138	\| Symbols: CPK1, ATCPK1 \| calcium dependent protein kinase 1 \| chr5:1417015-1419877 REVERSE LENGTH=610