barSeed - Barley Seed Development Database

Probe CUST_324_PI415269222

Source Contig TA36765_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_324_PI415269222	Hv_44K_v2	TACGTGAAAAGAATCTAGCAACTGATGGAGGTCGTACGCCTGCTAAGGTATGGCAGATTT	2181	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58756.5	3913	2e-24	3822 - 3881	100	60 / 60	plus	ABC06768
JLOC1	JLOC1_38198.1	3869	8e-25	3717 - 3776	100	60 / 60	plus
Harvest21	ABC06768	2870	3e-25	2791 - 2850	100	60 / 60	plus	ABC06768
Harvest35	U35_16950	2870	3e-25	2791 - 2850	100	60 / 60	plus

Contig Sequence (2244 bp)

>TA36765_4513 2244 Hv_44K_v2
CGGCACGAGGTCGCCTTTATGAAGGAAAGGAGCCCATTGAGTTTTTCCCAATATTTCAGA
ATTTGGTTATATTCAAGGGTGGTGCTAGTACTGGGTATAAGAAGTTTGTCTCAGAAAATG
GCATTCAGGATGATACATATTCAGAAAATGGGGTTGCACTGTTCCGGGTTCAAGGTTCAG
GACCAGATAATATGCAAGCAATTCAAGTTGATGCGGTGGCACCATCCCTGAACTCTTCGT
ATTGTTACATACTGCATGATGGAGATACAGTATTTACGTGGATTGGGAACCTAAGCTCGA
CAATGGATCACGAGCTCGCTGAGAGGCAACTAGATGTGATCAAGCCAAATCTCCAGTCCA
GAATGCTCAAGGAAGGATCAGAATATGATCAGTTCTGGAAGATACTTGGAATAAAGTCTG
AGTACTCCAGCCAGAAGATTGCGAGAGATCAAGAAAGTGATCCTCATTTATTTTGTTGTA
CTTTTTTGAAAGGGGTGCTTAAGGTTAGAGAGATATTCAACTTCACACAAGATGATATGA
TGACGGAGGACATATTTATTTTGGACTGTCGTTCATGTGTGTTTATATGGGTTGGACAAA
ATGTGGACACAAAAATACGTGCACAAGCTTTGAGCATTGGAGAGAAATTTCTAGAACTTG
ACATTCCAATGGAAAACTTATCACGAGAAACACCAGTTTATGTCATCAATGAAGGAAGTG
AGCCCCAATTTTTCACTAGGTTCTTCACTTGGGATTCTGCAAAATCAGCCATGCATGGCA
ACTCATTTGAAAGGAGGCTGTCTATATTGAAGGATGGAATAAAACCAAGAAGAGATAAAC
CTAAAAGAAGACCAACGACGTCATCGCACACTGGAAGATCAAGTGTGCCTGATAAATCTC
AGCGGAGAAGCACGTCTTTCAGCCCTGACCGTGTAAGAGTTAGAGGAAGATCACCGGCAT
TCAATGCATTGGCTGCGACCTTTGAGAATTCAAATGCCCGAAATCTATCAACCCCTCCAC
CAGTTGCGAGAAAATCATTTTCGAAATCTTCCTCCCCTGATCCTGTAAAGCCACCCCAGA
GAGCTGCCTCGATCGCTGCAATGTCTGCTTCATTCGAGCGGCCTAAACAAACTCTGATAC
CAAAGTCAATTAAAGCGAGTCCTGAGGTAAAGAAACCACAATCTGAAGCAAGCAAACCTA
AGCCAGAGGAAGAAGCCAAAGAAAGTACCCCTGCCACAAAGGATGGGCAAACTGTGACTC
CGACAATACAAGAAGATGTAAAGGAGGATCAGCCCGAAGACGAGGAAGGGCTTCCTACAT
ATCCATATGATCGCTTGAGGACATCTTCAAGCAATCCTGTCACAGACATTGATAGTACAA
GGCGTGAGACGTATCTATCTTCATCGGAGTTCAGGGAGAAGTTTGGCATGACAAAAGAGG
CTTTTGCGAAGCTACCGAAGTGGAAGCAGAATAGGCTCAAGATCGCTCTTCAGCTCTTTT
AAAATCTTCTGCTATGAAACAGGCAGTTATCTCTACTTTGTGAAAGCAATGACGGCGAGA
TTGGTTTTCAAAGGCAAATCTCAAACATGAAGATCTCTCTCGCACTCGTCGCAATGTTAA
GAAGAGACATCGGTAAGTGTAAGCCTATCTGGGTCAAGGGGACCCTTGGTAGGCGTCTGA
GGAGCTGGAGCAGTGAGTTTTGAGCCGCCCATGCCCCCGAATTGTGTGTTGTCCACTGAC
GAATTCTCCATGTCGTGTGTCTGGGTCACCGCATTGGCGGTCCGGTCACACACCCTAATT
CTTTCCTTTCCAAGGTCACCGGTTTGGTTGTGAGCTTGCAATGCTTTTTCCTCGCCCCCT
TTGAAACCTCACCATTTGTTTCATTCATTCATGCTGTGTATGGTTTCCTGACACAAATAA
TGTTACATATATGGTGTAAGAAGTTAGGTGATGGGATGGACCGGGGCGAGAGCCCCTTTT
GTCGGAAAATCCAGGTGATGAACGGGAGAGCGCCTTGCCCTCGAAATTTGGTCTTTTAAG
TGGTAACTAGTTGTTCCTGCGTGCAAATTTTGTAATCTGATTTACAGCATGACTTTGTTC
TCTTTAGTGATTCCTGTGTGCAGATTTTGTAATTAGATCCCACGGTTTGTATCTACAGAC
TGACCGTAATTTTGATTTGTATACGTGAAAAGAATCTAGCAACTGATGGAGGTCGTACGC
CTGCTAAGGTATGGCAGATTTCAG

Homology of Contig TA36765_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g44890.1	1017	protein\|villin protein, putative, expressed
Brachypodium v1_2	Bradi1g31417.1	969
Arabidopsis v10	AT4G30160.2	983	\| Symbols: VLN4 \| villin 4 \| chr4:14754528-14759511 FORWARD LENGTH=983