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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_32486_PI390587928Hv_44K_v2TGGGAATGTAGCTACTCCCATCAGACTAAATCAGCGTCAATTGGTATGGATATGAGGTTT794GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4961.4961.0290.8960.5220.442
Raw 292.662439.276273.089364.08976.11169.361



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_12089.19683e-22848 - 9069859 / 60plus ABC13177
JLOC1JLOC1_8083.120171e-22883 - 9419859 / 60plus
Harvest21ABC131779303e-25795 - 85410060 / 60plusABC13177
Harvest35U35_48519303e-25795 - 85410060 / 60plus



Contig Sequence (930 bp)

>U35_4851 930 Hv_44K_v2
CAAAAAACAGAACCTAGCTGTCCACGGGAAGAAATTTCGTACTCCTACTAGTAGTACACA
TGTGAAGTTCAGATCTGAATACAGCTTCCGAACAAAGCCGACGCCATCGACCAAGCGGAG
ATCCTCTGAAAGATCCGCGCCGATCCCGCAAGACACCACGCCCTTCTTCCTCTCGTCAGA
TAATCCAACACCTCGCCGCTTGTTTCCGGATCTGAGCGAGGGATCTGCCCGCGTCGGGTC
TCTCTTCGGGGAGGATGAACTGGGTCGGGCGCAAGATCCACCTCTACAATGTCAACATCG
GCCTCTACATGCTCGATTGGTGGGAGCGCTACCTCTTCAATACGTTGATGCTTTGCCTTC
TCTGGTACATTCTACGGTATCTCACTGGGTTCTTTCAAAGTAATCTGGAGACCATCCTAC
ATGGTGCGAACTATCTTCTACAAGGTAGTTAATCTTCAAAGGCAAAAGCACATATGTTGA
TGGCTTTATGGAATCCCCCCTGTAATCTATGTTTTGATTAGTCTCAGACTGAGAAACTAG
AAAGGAACGGTTTATGTGTTGTTGTGTTTGCAGCCGTTTTTTGTACTGTATGTCTGCATT
GTCCATGGTTATTGTAATATATTGATGTCGCTGATTCTCAGTTGACTGCCCGGAACTTCT
GTAAATCTAGCCCCGTCGATATTTGCACATCTTAAACCTCAAATTGGAGTCCAACTTTTA
GTCGTTTTTTTTTCATTTTTCTCAGTGGGGTCATGAACTTAGCTATACATTGTCCATATG
TCTCCCTCTGTATTTGGGAATGTAGCTACTCCCATCAGACTAAATCAGCGTCAATTGGTA
TGGATATGAGGTTTTTTTTTTACCTTATGTGTTGTGACTTTAAGTAATTTCTCTCTAAAA
CATTTTCATTGCTTAAAAAAAAAAAAAAAA



Homology of Contig U35_4851 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None