barSeed - Barley Seed Development Database

Probe CUST_32480_PI390587928

Source Contig U35_4858

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32480_PI390587928	Hv_44K_v2	ATGCTCTGTATAAGATGAAGTAACATTTGGGACAGCATTGTGCACATGTTTGAGAAAAAA	1177	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.971	1.275	1.473	1.567	0.682	0.609
Raw	166.858	346.272	350.240	581.541	89.294	85.703

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356634	3397	3e-22	3324 - 3379	100	56 / 56	plus	ABC10362
MLOC	MLOC_38038.2	926	3e-22	788 - 843	100	56 / 56	plus	ABC10362
JLOC1	JLOC1_24694.1	785	1e-22	558 - 613	100	56 / 56	plus
Harvest21	ABC10362	1248	3e-25	1178 - 1237	100	60 / 60	plus	ABC10362
Harvest35	U35_4858	1248	3e-25	1178 - 1237	100	60 / 60	plus

Contig Sequence (1248 bp)

>U35_4858 1248 Hv_44K_v2
TGTTACGACCGCGCTCCGGCGTCGGGCCTGCCTGAGGCCGGGCTAAGCGCTCTGGACATC
GCGGGGCTCCCGCTCTACTCCGTTGGGCACAGCAACGGTGCGCTGCTTCAGCTGCTGGTT
GGGAGCTACTTCTCAGAAAAGATACCGAAGGCTAATGCCATTGTCTCATTCAACAATAGG
CCCGCTTCAGAGGCTGTTCCTTACTTTGAGCAGATAGGCCCCCTCATTAGTCAACTAACG
CCTATGATGGAGACATCACCTGTATACTCTGTGGCAAGAGATGCATCAGGGAATGCGTGG
AAGGCCCTGTTTGATTTAGCTGGAGGTTTGATACGGGAGTATGACCAAGAAGCTATGGTA
TCCGTAAGCAAATTTGTCGATCAGTTACCATTAGTAATGAATCAGGTTACTGAAGGTGTA
TCTGAATTCAAACCAACACCACCTGAGAACCGTGAATTCTGCAAGAATTCTTACAGTGTA
CCTAATACATTACTGGTGAAATTCAGCGTTGATGCTATTGATGATACAGAAATAATTGAG
GACATCTTGATACCCCGGGTAGACTCAATTGGTGGACAAATAAAGAAGGTCGTACTGTCA
GGAACACATCTAACTCCGTGTGTACAGGATGTTAAATGGCAGGTTGGTTCAGAATACACT
CCAGCGGATGCTCTGGCCCAGGGTTTAAAATCATTGGCTCTGAATGAGACTAGGGTCCTC
TCAAGAACTATCGCTGACTACTTCAGATCCCTTTAGAAGCTTAGATTATAATAATTCTAT
GTCCATTGAAACTTCAGAATGCTGCTTATGAAGTTGGCTGGGGTGTGGGGGTTGCCACTA
CAAGGACACACCGGAGTAAATATTATAGCGCCTACGACTCGAAGAGCGATGTATTTGGAC
TGTTTGGCACCGGCTGGCCGTACTAGTTCTATTATCTGATCAAGATGGGGAGGTTGGGAC
CAAGTTGTTGGACTCTAGTCAGGCTATACACTGCATTTAACCCGAAATCCAAGAGGAACA
AGGATCCATTCTCAGGTATGGCACCAGCGACGCTGAGTTGGCCGTATACACCTTCCAGCA
GGCAGGCAAGTCTGTCCATGCACGGCCTTCTTCTGGTCGGCATTTTACGTGTGTAATACG
ACAATGCATACATCATGTGTAGATTTGCCATGTTTATATGCTCTGTATAAGATGAAGTAA
CATTTGGGACAGCATTGTGCACATGTTTGAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_4858 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi4g31070.2	396	5e-150
Arabidopsis v10	AT3G43540.1	373	4e-98	Protein of unknown function (DUF1350) \| chr3:15430770-15433035 FORWARD LENGTH=373