barSeed - Barley Seed Development Database

Probe CUST_3247_PI390587928

Source Contig U35_22915

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3247_PI390587928	Hv_44K_v2	CCACCCCAACAAAAGATGACCAGATTTCTGCAGCAAGACGATTATCTGCATCTTCAAAGG	1095	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.580	0.907	1.938	2.694	1.063	0.918
Raw	30.560	73.092	138.702	326.678	44.130	40.559

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250145.1	2068	2e-24	1128 - 1187	100	60 / 60	plus	ABC16344
MLOC	MLOC_72239.2	1410	2e-24	3 - 62	100	60 / 60	minus	None
MLOC	MLOC_72239.1	1280	2e-24	37 - 96	100	60 / 60	minus	None
JLOC1	JLOC1_48044.1	1271	8e-25	1210 - 1269	100	60 / 60	plus
Harvest21	ABC18269	1155	3e-25	1096 - 1155	100	60 / 60	plus
Harvest35	U35_22915	1155	3e-25	1096 - 1155	100	60 / 60	plus

Contig Sequence (1155 bp)

>U35_22915 1155 Hv_44K_v2
GCAGCAGGGCAATGGCGATNTGAAGGCCGTCACCCGCCGCCCGCCCGCCGGAAAGCTCGA
CGGGAATGGAGCGGATCCTCAAGTCCGCCAGGGAGTNCGGCTCCCTCAACCTCTCCAACC
GCGCCCTCAGCGATGTGCCTGGGGAGGTGTACAACAACTTGGACACTGGCAGCTTGGACG
ACAAATGGTGGGAGGGAGTGGACCTTNAGAAGCTCATACTGGCCCATAACAATCTCGAAG
TCTTGAGAGAAGACTTGAGAAATCTGTCTTCTCTCGTCGTGTTAAACATAAGCCACAACC
AGATATCTTCCCTCCCCGCAGCCATTGGAGACCTTCCTTTGTTGAAATCGCTGGATGCCT
CGTTCAATCAAATAAAACTTATACCTGAAGAAGTTGGCTTGGCTAGTGCTTTAGTCAAGG
CTGACTTCTCAAATAATTGCCTCACTGAGCTGCCAGCTAGCCTTGGCAGATGCTTGAACT
TGTCAGAACTCAAGGCATCGAACAACAACATATCCAGATTGCCAGATGAGCTTGCTGGCT
GTTGCAAGCTAAGTAAATTTGATATGGAGGGAAACAAGCTTGTGCTACTTCCAGAAAATA
TGTTCACATCATGGACACTGCTCACAGAGCTGAATGCCGCAAAAAATCAACTTACGACCA
TTCCGGCTAGTATCGGAGCACTTTCAAAGTTAGTTCGAATGGATCTGCACCAGAACAAGA
TAACTTCGATTCCTTCTTCCATAAAGGGCTGCTCTTCTCTAGCTGAGTTCTACATGGGAA
ATAATTCATTGTCGACAATACCAGCTGATATTGGCATGCTATCAAAATTAGGAACACTTG
ATCTTCACTCCAATCAGCTGAAGGAGTATCCTGTGGGAGCTTGCAAACTCAAGCTCAGTT
TTCTTGATCTGTCAAACAACGCATTATCCGGCCTGCCACCCGAACTAGGTACAATGACAA
CCCTAAGAAAGCTTCTGCTTAGCGGAAATCCTATGAGAGCACTTCGTAGTTCTTTGGTTT
CTGGACCAACGTCAACATTGATGAAGTATCTGCGAAGCCGCCTTTCGTCTGATGAAGAAG
CATCAGGGTCTAGAACCACCCCAACAAAAGATGACCAGATTTCTGCAGCAAGACGATTAT
CTGCATCTTCAAAGG

Homology of Contig U35_22915 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g58030.1	587	0.0	protein\|leucine-rich repeat-containing protein 40, putative, expressed
Brachypodium v1_2	Bradi3g56757.1	587	0.0
Arabidopsis v10	AT3G15410.2	590	9e-165	Leucine-rich repeat (LRR) family protein \| chr3:5203380-5207279 FORWARD LENGTH=590