barSeed - Barley Seed Development Database

Probe CUST_32477_PI390587928

Source Contig U35_4861

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32477_PI390587928	Hv_44K_v2	TGAATTCTTCTGTAGGACTATCATTGGATGTATTCGTAACGGATGCGGCCCTCATTTGGG	1286	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.923	1.461	2.149	1.397	0.522	0.356
Raw	7732.157	19109.073	24362.100	23983.870	3272.627	2426.397

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361067	1386	2e-24	1200 - 1259	100	60 / 60	plus	ABC12179
MLOC	MLOC_13492.1	776	2e-24	386 - 445	100	60 / 60	minus	ABC12179
JLOC1	JLOC1_9143.1	617	8e-25	227 - 286	100	60 / 60	minus
Harvest21	ABC12179	1374	5e-23	1287 - 1345	98	59 / 60	plus	ABC12179
Harvest35	U35_4861	1400	3e-25	1287 - 1346	100	60 / 60	plus

Contig Sequence (1400 bp)

>U35_4861 1400 Hv_44K_v2
GCCGAGACACAGCTCGAGCTCAGCTCCCCACTCCCCCCCCCCCCTCCCCGAGGCCCCAAC
CCTAAGCCCCTCGCCGGGCCCCAATGTCGAGGCTGGCGGCCGCGGCCGCAGGGGCGCTGC
TTGTGATCCTCGCAGTGGTGGGCAGCGCGGCGGCGAAGACGACGATCGAGCCGTGCTCCA
CCGCCGACTCGTGCGCGGCGCTGCTCGGCTACTCGCTCTACGCCGACATGAAGGTCTCCG
AGGTGGCGGCGCTCTTCGGCGCGGACCCGGCGGCGCTCCTGGCCGCCAACGCGCTCGACT
TCGCCTCCCCCGGCGCCGCCAACCGGATCCTCCCCGCGGGGCTCCTCCTCCGCGTCCCCA
CCCGCTGCGCCTGCGCCGACGGCGTCCGCAAGTCCGTCTCCGTCCGCTACGCCGCACGCC
CCGCCGACACGCTCGCCACCGTCGCCGACGTCGTCTTCGCGGGCCTCGCCTCCGCCGACC
AGATCCGCAACGCCAACGGGCTCGCCGAGGCGGACCCCGACGCGCTGCTCGACGCCGGCC
AGATTCTCGTCGTCCCCTTCCCCTGCGTCTGCCTCAACTCCACCGACAACAACCTCCCCG
CCGTCTACCTCTCCTATGTCGTGCGGGTCGGGGACACCGTGGAATCCATCGCCGCCAGCC
ACGCCACCACCGTCACGGATCTCAGCAATGTGAATGCCATGGGGAGCCCCATCGTGGCAC
CCGGAGACATCCTTGCAATTCCATTGTCAGCATGTGCGTCTACGTTTCCTAACTTTGCTT
CGGACTATGGATTGCTGGTGGCAAACGGAACCTATGCACTAACTGCTGGCAACTGTGTGG
AATGCAGTTGTGGGCCAGGGGATCTCAATCTGTACTGCACTCCCGCTTCATTAGGAACAT
CATGTTCAAGTATGCAGTGCTCCAATAGCAGTCTAATGCTTGGTAATATGACTAGCCAGC
CCACCAGTGGTGGCTGTGGTGTCTCGTCTTGCAGCTATGCTGGCTTCATTAACGGAAGCA
TTGCCACATCGCTATCCTCAGGTCTTCAACCTACATGCCCTGGACCGCATCAATTTCCTC
CACTGATGGAGCCGTCCACTGCAGCAATCCATGGCTCATACCTTGCTCCGTCGCCTTCGC
CAGGACCTGGGGAGGCCGGTGGCGCTGTTCCTGGCTCGTCCGACTCTGGAGCGTCCTCCC
ATTCTCTTGCTGGAAGCCTCTCGCCCTCGGTGCATCGACTGCATCAAATGATCCTCATTC
TTTCTTTAGTCTTCTACCTGCATATGTGAATTCTTCTGTAGGACTATCATTGGATGTATT
CGTAACGGATGCGGCCCTCATTTGGGCCCGGTGGAACCTCTATGATAAGCTTTTCCAGCT
CCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_4861 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g10660.1	410	6e-161	protein\|lysM domain-containing GPI-anchored protein 1 precursor, putative, expressed
Brachypodium v1_2	Bradi1g46200.1	398	1e-168
Arabidopsis v10	AT1G21880.2	416	5e-108	\| Symbols: LYM1 \| lysm domain GPI-anchored protein 1 precursor \| chr1:7680689-7682526 FORWARD LENGTH=416