barSeed - Barley Seed Development Database

Probe CUST_32475_PI390587928

Source Contig U35_4863

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32475_PI390587928	Hv_44K_v2	GAATCATTCGTCCTCTGAAGGTAGAAGCAGTACATGATGGCCATTTGCATACCAAACTGC	1284	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362785	578	2e-24	513 - 572	100	60 / 60	minus	ABC14289
Harvest35	U35_4863	1458	3e-25	1285 - 1344	100	60 / 60	plus

Contig Sequence (1458 bp)

>U35_4863 1458 Hv_44K_v2
GGGTTCTTGGCGCCCCCGCTGTCGGCGTTCGGCGACGGCATGGGGTGGGACGACGAGGAC
GAGCTGGATCAGCAGAGCATGGACGCCTCCTCCTTGGGGGTCTCCGCCTCGCTGGAGAAT
GCGGCGGTCGGCGCGCCGGGGGGAGGTGGCGGCGGCGGCAACGGGAAGGGCAAGAAGAAG
GGGATGCCGGCCAAGAACCTGATGGCGGAGCGGCGGCGCAGGAAGAAGCTCAACGACCGC
CTCTACATGCTGCGCTCCGTGGTGCCCAAGATCAGCAAGATGGACAGGGCTTCAATCCTC
GGTGACGCAATTGACTACCTGAAGGAGCTCCTGCAGAGGATCAGCGATCTTCACTCCGAG
CTCGAGTCTGCTCCAAGCTCTGCTGCACTCGGTGGACCATCGACGGCCAATACCTTCCTG
CCGTCGACGCCCACTCTGCAGCCGTTCCCCGGCCGCATCAAGGAGGAGCGGTGCCCGCCG
GCCCCGTTCCCTAGCCCCAGCGGCCAGCAGGCGACGGTTGAGGTGAGGATGAGGGAGGGG
CAGGCGGTGAACATCCACATGTTCTGCGCGCGCAGGCCGGGCATCCTGCTGTCCACCATG
AGGGCGCTGGACAGCCTCGGCCTCGACATCGAGCAGGCCGTCATCAGCTGCTTCGACGGC
TTCGCCATGGACGTCTTCCGCGCCGAGCAATGCAGGGAGGGCCCTGGGCTGCTGCCGGAG
GAAATTAAGGCGGTGCTCCTGCACTGCGCCGGTCTCCAGAACGCGATGTAGGCGAATCCC
CGGGAGACAAGACCGCCAGGATGGTGATTGATGATCATGGGCTCTCCCTCTCTCCTGACT
GTCTGGTCAGGACGATGATGCTAGATGTACAAAACCTTGTGCTGTTCTTTGCTTTACCAG
TTCCTTGGACGGACAAATCTCATGGGATGAGGCTCGCCATCTCCCTGCAGACATGAGACC
GAGATCTCGGTCCATCTTCCCTCTCTGTGGTCGTCGTGAACCTGTGTGATGTAATGGTTA
TCTTTCCCTACCGTTGAAGACTTGAAGTGAACTATAGCGGCCGCTAGTGCCTAAAAGTCG
ACTTTATTCAGACTAAAAAGTGGACATCCTTTTGGAGTACAAAATGGACTTCGTGACTCT
GCAAGTCCACATCACCATGTATTCGAGATACATATAAACCATTCAGAGTTCTGGTGCAGT
TCAGATTGCTGAACTATTCTACTTTCCTGAGAACTGATTTTACAACAAAACAAGGGTATG
TATTCAGAAGCTAATCGTGGGTCAGAATCATTCGTCCTCTGAAGGTAGAAGCAGTACATG
ATGGCCATTTGCATACCAAACTGCAGGTGTGCACACGACTACAGAAAAGGTGCTGACAGA
TTAGCCATCCCAAGGCGTAGGTGTTATGCAGTTATGCACCGCCACCGGTACAACAGACAT
TTCCGGCCTAAATGGGCA

Homology of Contig U35_4863 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g70310.2	382	5e-116	protein\|inducer of CBF expression 2, putative, expressed
Brachypodium v1_2	Bradi2g59497.1	243	3e-109
Arabidopsis v10	AT3G26744.1	494	4e-82	\| Symbols: ICE1, ATICE1, SCRM \| basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr3:9832953-9834790 REVERSE LENGTH=494