barSeed - Barley Seed Development Database

Probe CUST_32462_PI390587928

Source Contig U35_4877

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32462_PI390587928	Hv_44K_v2	TGACTTTCTTAATTCGCAATGCAATGCAGTGTGACAAGAACAAAGAGCTCTCAAGTCAAA	1079	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54886.3	1900	6e-24	1831 - 1889	100	59 / 59	plus	ABC11500
JLOC1	JLOC1_35356.3	3820	3e-24	3751 - 3809	100	59 / 59	plus
JLOC1	JLOC1_35356.2	3913	3e-24	3844 - 3902	100	59 / 59	plus
JLOC1	JLOC1_35356.1	3916	3e-24	3847 - 3905	100	59 / 59	plus
Harvest35	U35_4877	1153	3e-25	1080 - 1139	100	60 / 60	plus

Contig Sequence (1153 bp)

>U35_4877 1153 Hv_44K_v2
TTCGGGGCGAGGGCCGCGGAATCGAATCTTTTTCCACCTTCTTTCCCTCCATCCCGCCTT
CTTCTTCTTCTTCTTCTTCTTCTTCCCTTCGCTTCCTTCCTTCCCCGCGCGATCGGTCGA
TCGATCAATCGCTTGATCGAGTAGGCGATCGGAGCACAAGTAGCCGATCGGGGAGCGATA
CAAGATGTCGCCGGCGGAGATGGGGTCCGACAAGATGAAGATGAAGATGAAGATGATTGA
GGTGGAGGTCCAGGCGGCGGCGGCGGATCCTGATGACTGCACGGCTTCCGGCGCCGGCGA
CCCCAAGTCCTGCGCCGACTGCAACACCACCAAGACGCCGCTCTGGCGCGGAGGACCCAA
CGGACCAAAGTCGCTGTGCAACGCGTGCGGGATCCGCTACCGGAAGAGGCGGCGGGTGGC
CATGGGGCTCGACCCGGAGGCCAAGAGGAAGCCCAAGAGGGACGACGCCATCAATTCAGC
CGCAGCCGCAGCCGAGGCCTCTACCCAGCAGCAGGAGGAGGTCACCAAGCCCACCGACGA
CGACAAGGCGGTCAGCACCAACAAGACTACAAAGACGCACACCGTTGAGCTCCACATGGT
GGGGTTCGGCAAGGACGCCGTGCTCAAGCAGCGGCGCCGGATGCGCCGGAGGAAGCCGTC
GTGCCTGGGAGAGGAGGAGCGCGCCGCCATGCTCCTCATGGCGCTCTCCTCGGGCGTAAT
ATACGCCTGATCCATCCTTGATTACTTGGATGGATGGATGGATTCTGATCGATCGATCGT
GTCAGTCAGTTTGGATCGATCCATTCCATCCAGGATGAATATGATGAAGAGGTTGTTGTT
GGCATCATCAAATCAATAATCATCTATGCCATGCTATATGGTGAAGCTGATGATGATGTA
GTCCCTAGATGATTAGCAGCACCCTGCCTGCCTAGCTGTAGCTGTAGCTGTGTTGGTTGC
TGCTTACCGTTCTTTCGTTCCTCCTATATAAGTAAGTAAGTACTCTAGTAGCTAGCTGTG
GTAGTGATGGTCGTCCTCAGTCATGTTACTGTTAATGTTTGTCCTAAGTATGTACCGTCT
GACTTTCTTAATTCGCAATGCAATGCAGTGTGACAAGAACAAAGAGCTCTCAAGTCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_4877 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g62660.1	157	3e-61
Arabidopsis v10	None