barSeed - Barley Seed Development Database

Probe CUST_32460_PI390587928

Source Contig U35_4879

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32460_PI390587928	Hv_44K_v2	AGATTTAATGGAGCACTTCAACTAGTGCAATTTTACTCTGGCAAATAATAAAGCTGGTGC	1073	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.980	1.776	1.062	0.920	0.392	0.526
Raw	178.065	259.030	132.537	181.791	26.568	39.259

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64437.2	2132	2e-24	2063 - 2122	100	60 / 60	plus	ABC13806
MLOC	MLOC_64437.1	2391	2e-24	2294 - 2353	100	60 / 60	plus	ABC13806
JLOC1	JLOC1_42312.1	2131	8e-25	2052 - 2111	100	60 / 60	plus
Harvest21	ABC13806	1150	3e-25	1074 - 1133	100	60 / 60	plus	ABC13806
Harvest35	U35_4879	1154	3e-25	1074 - 1133	100	60 / 60	plus

Contig Sequence (1154 bp)

>U35_4879 1154 Hv_44K_v2
GGAGAAGCTGTCCAGGAGCTAGATGTTGCTCCTTCGTCAGAAGATGGCCCAATAGCATCC
ACTGTGAATCGTACAAAACGCTGGCTCCTTTCACACTCACAACATCTCAACTTCTTCACT
ATCTTGATACTTGCTTCGGTTCCAAACCCGCTGCTTGACCTTGCTGGTATTATGTGCGGT
CAATTCGGCATACCCTTCTGGGAGTTCTTCTTTGCAACTATGATCGGGAAGGCCATCATC
AAGACTCATATTCAGACGCTGTATATCATCTCGTTATGCAACAATCAACTATTGTACTTT
ATGGAAAAGGAATTGATCTGGATATTTGAGCACATTCCTGGGTTTTCAGCGACCCTGCCA
TCTGTAATTGCCAAACTCCACAGTGCTAAGGAGAAGTATTTATCACCACCTGTGTCAGTC
TCACCATCTTCACAAATGGAGGATAAACAGTGGAATTTATCTTTTGCGTTGGTCTGGAAT
AGTGTAGTGTGGCTTGTGCTTGTGAACTTCTTCATTAAGATCATCACATCGACCGCTCAG
GATTATCGCAAAAGGCAGCAGGATGTAGAGATGGAGCTCATCACTGATTCCTCGTCCCAG
AATCATTCTAAAACTAACTGACAAGAAACATGGTTGTATTTATTCAGCTGCACATTGCGA
ATATTCTCCTCAGTAGCCTTTTGCGCCCGGCTAAGCCCTTTGGGGATGGTCCAAATGCTG
GTAGAAGTCTAAATGCTGGTAGAAGTTGCGTTCTTCTGTACAGTGAACAGAAACATGGGC
CTCTCCAACCCGCCACAAGTGATGGCTGCGACTTTTTGTCACTGCGCCTCTACTGGCAGT
TCCTGGAGGAGAATCAGTCCTGTTATTTTTTCAGGCGTCAAGTTGGATGAACTTTAGGGA
TTGTTTGTTTGTTTAGCACGATTTCATTACTAAGATGTATTTTACCAGCACCTTTTCTAT
ACCTTCTTATGTTGGAAATACGGTAGCTGATAGGGCACCCGAGAGTACTCAAAGGTGATA
TGGTTTATTGTTACATTCACTATGCAAATGCATATTCTCAATTGGAGCCAGCTAGATTTA
ATGGAGCACTTCAACTAGTGCAATTTTACTCTGGCAAATAATAAAGCTGGTGCTATTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_4879 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g57066.1	439	5e-102	protein\|transmembrane protein 49, putative, expressed
Brachypodium v1_2	Bradi2g51700.1	440	4e-114
Arabidopsis v10	AT4G14950.1	416	3e-70	SNARE associated Golgi protein family \| chr4:8545517-8547722 FORWARD LENGTH=416