barSeed - Barley Seed Development Database

Probe CUST_32457_PI390587928

Source Contig U35_4882

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32457_PI390587928	Hv_44K_v2	TTGTTCGAACCTGAGACTAACGAATTGGTTCTCTATTGCACCATTCTTGTGTGCAAGGCA	782	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.881	1.185	1.963	1.942	0.797	0.877
Raw	198.262	428.300	599.224	921.254	134.782	161.019

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68180.1	3862	9e-22	3018 - 3072	100	55 / 55	minus	ABC12146
MLOC	MLOC_68180.2	2252	9e-22	1401 - 1455	100	55 / 55	minus	ABC12146
MLOC	MLOC_68180.3	1311	9e-22	472 - 526	100	55 / 55	minus	ABC12146
JLOC1	JLOC1_45092.1	1253	5e-22	412 - 466	100	55 / 55	minus
Harvest21	ABC12146	853	2e-22	773 - 827	100	55 / 55	plus	ABC12146
Harvest35	U35_4882	880	3e-25	783 - 842	100	60 / 60	plus

Contig Sequence (880 bp)

>U35_4882 880 Hv_44K_v2
AACCCAAACCCCTTCAGTTCACCTCGAGGATAGGATTTTGCTCGTCCCGCAAACCTCTCC
GGCCATGGCCTCCTTCCCGCTGGCATCCGCCGGCCGCTCCCTCCCCCCGCAAGGCTTCCA
CCACCCGGCAGCCGCGACCACCCGCACCGTCTCCATCCCATCCCCCCCTGCTTCTTCAAA
GGGCGCCGCCCCCCGCAGCCTCAGCGCCAGGAGCCACCGCGACCGCAGGCCAACCGTTCG
ACGGAACGCCGCGGAGGCCTACGTCCCGGGCTCCGGCAAGTACATCGCGCCGGACTACCT
CGTGAGGAAGGTGTCGGCCAGGGAGCTGGAGGAGCTCGTCAGGGGGCAGCGGAGGGTGCC
GCTCGTCGTGGACTTCTACGCCACCTGGTGCGGGCCGTGCGTGCTCATGGCGCAGGACGT
CGAGACGCTCGCGGTCGAGTACGAGGACACCGCGCTGTTCGTCAAGGTGGACACGGACGA
GGAGTACGAGTTCGCGAGGGATATGCAGGTCAGGGGGCTGCCCACGCTCTATTTCTTCAG
CCCGGACCAGGGCAAGGACGCCATTAGGACCGAGGGGCTAATTCCGATCGAAATGGTCAG
GAACATCATCGATAACGAGCTGTGAGTTCAGTTTAATGTCTCTAGTAGCTACGCTTTCTA
GCCGAGTCTTGTACTAGTTCTTAGCGTTTATTTAGGCGCAGTCCGCGTGGTTGATTGGAG
CTTTGTGTTGCTCCGTCCTAGGTTCCCGTGTGCAAGATCTGCATGAGCAGAATGTAGCAT
CATTGTTCGAACCTGAGACTAACGAATTGGTTCTCTATTGCACCATTCTTGTGTGCAAGG
CAGCGGCCGCTCGAGCATCTTCGAAAGGGCCCAATTCGCC

Homology of Contig U35_4882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g29110.1	190	1e-76	protein\|thioredoxin, putative, expressed
Brachypodium v1_2	Bradi3g35050.1	184	3e-86
Arabidopsis v10	AT3G06730.1	183	2e-59	\| Symbols: TRX P, TRX z \| Thioredoxin z \| chr3:2124276-2125845 FORWARD LENGTH=183