barSeed - Barley Seed Development Database

Probe CUST_32456_PI390587928

Source Contig U35_4883

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32456_PI390587928	Hv_44K_v2	CCTTTTCGATTGTTATTATGGTGAGCCGTGTCATTTGTCGTGTTTCTTAATTCATGTTAT	484	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373604	1236	2e-24	493 - 552	100	60 / 60	plus	ABC09123 ABC11215 ABC41275
JLOC1	JLOC1_2357.1	331	8e-25	223 - 282	100	60 / 60	plus
Harvest21	ABC11215	596	3e-25	485 - 544	100	60 / 60	plus	ABC11215
Harvest35	U35_4883	596	3e-25	485 - 544	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_4883 596 Hv_44K_v2
GCGAACCAAGCCTCAGAGATCACCACGCACAGCAGCTAGCACCACCACCGCCGCCGCCGC
CCTCAGGAAGCGCAGTCGACGCAGCTGAGCCATGGCCCGCCGCACAGCCCTCATCCTCGC
CGCGGTCCTCCTCGTCGCCCTTGCCGTCGCACCATTGACCAAGGCCAAGAAGGCCGCCAA
GGACAAGGAGGAGAAGGCCGCCGACGCCCCCGCGGCCGACGCGCCGGCCGCCGACTCGCC
CGCGGAGGGGCCCTCCGATGGACCGGCGGCTGCCCCCGGGCCCGAGGGCATCTCCGGACT
CTCGGACGACAATGACGACGACGACGACAAGTGAACCCGAGTGCCCTTCTGGAAGGATCC
GTTCCATGCTGACCAGATCACCCGCGTGGATTTTAATTTCGAGACCATGATGATAATAAT
ACTACGCATGGGCCTGTTGCCCTGCTAGGAGGATGCCGTCGTAGTTCAAATTTGTGTTTT
TCTGCCTTTTCGATTGTTATTATGGTGAGCCGTGTCATTTGTCGTGTTTCTTAATTCATG
TTATTTGTAATAACAGTATTTATTGAATCAAATGTTTCTGTGTTGCTATAAAAAAA

Homology of Contig U35_4883 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None