barSeed - Barley Seed Development Database

Probe CUST_32452_PI390587928

Source Contig U35_4887

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32452_PI390587928	Hv_44K_v2	CTTGGCATGCCACTGCAACTTACTGTTAACTCTTACTGCAGTTATATTTGTGTTAAAAAA	1605	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.285	1.446	1.278	0.901	0.299	0.240
Raw	751.449	1326.837	1019.128	1119.047	133.413	116.520

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC12341	1631	3e-25	1561 - 1620	100	60 / 60	plus	ABC12341
Harvest21	ABC37827	215	8e-21	12 - 74	95	60 / 63	minus	ABC37827
Harvest35	U35_4887	1676	3e-25	1606 - 1665	100	60 / 60	plus
Harvest35	U35_42270	215	8e-21	12 - 74	95	60 / 63	minus

Contig Sequence (1676 bp)

>U35_4887 1676 Hv_44K_v2
CGTGTACAAGGCGCGGGACTCGCTGAGCGGCAAGATCGTGGCGCTCAAGAAGGTGCGCTT
CGACAACCTCGAGCCCGAGAGCGTGCGGTTCATGGCCCGGGAGATCCTCATCCTGCGCCG
CCTCGACCACCCCAACGTCATGAAGCTCTACGGCCTCGTCACCTCCCGCATGTCCTGCAG
CCTCTACCTCGTCTTCGACTACATGGTCCACGACCTCGCCGGACTCGCCGCCAGCCCCGA
CATCAAGTTCACTCTGCCACAGGTCAAGTGCTATGTGCATCAGTTGCTGTCAGGGTTGGA
GCATTGCCACAATCAGGGGGTGCTGCATCGTGACATCAAGGGCTCGAATCTACTCTTGGA
TGACGACGGTGTGCTGAAGATTGGAGACTTTGGTCTGGCGTCGTTCTTCGACCCGAACCA
TAAGCAACCGATGACCAGTCGCGTGGTGACGCTGTGGTACCGGCCACCAGAGCTGCTGTT
GGGTGCTACGGATTATGGAGTGGGTGTGGACCTGTGGAGCGCCGGATGTATCCTTGCTGA
GTTGCTGGCTGGGAAGCCTATTATGCCGGGACGGACCGAGGTAGAACAGCTGCATAAAAT
ATTTAAGCTATGTGGATCCCCCGCTGAAGAATATTGGAAAAAATCGAAGCTTCCTCATGC
AACCATATTTAAGCCCCAGCAGCCGTACAAAAGACGAATAGCAGAGACATTCAAAGATTT
CCCGCAATCAGCACTTCGGCTGATTGAAACACTCCTATCAATTGATCCTGCTGACCGTTT
AACAGCAACTGCTGCATTAAATAGTGATTTCTTTAAAACGGAACCTCGTGCTTGTGATCC
ATCAAGTCTGCCCCAGTACCCACCAAGCAAAGAGATGGATGCAAAACGAAGAGATGAAGA
AGCTAGACGTTTAAGGGCTGCTGGTAGCAGACCTAATGGTGATGGAGCTAGGAAGACAAG
GACCCGGGATCGGCCTAGGGCTGTTCCAGCACCAGAGGCAAATGCCGAACTTCAAGCAAA
TATTGACAAAAGAAGGCTAATAACGCATGCAAATGCGAAGAGCAAGAGCGAAAAATTCCC
TCCACCACATCAAGATGGTGCACTCGGCTATCCGTTGGGTTGTTCGAATCACATGGAACC
TACATTTGAGCCCCCCGATCCGTCTTCGTTCAGCACCGTATTTCCGTACGACAAGACCGC
CGTGCCTACTTGGTCTGGACCACTGGTGGACCCTCCTGGGGGCAACCAGAAACGGAAACA
CAAGTCCGGACGCTCTTCGAAACAACCATCAACTGCCCGTGCTCGGTGATACATTATGTG
ATATTTGGTGCATAAGAAATTCTTCAATACGGACAATTTACTCGGCAACAGTTCCTGGAA
GCTGGGGAGATCTGATTATACGACCAAGGCAAGCAGCGATGAATTTTTTCAACAAGATCC
ATGAATTCATTCCATGTACGGATTCTTTTCAAACCGCCGTGTATAGATGGGAGAGGGAGC
TCAGTTAGTCGAATTCTGTACATTAGGTTGTCCTTTTCATTTCTTACAAGCAGCTATATG
TCATGTTAGATTTGTTTGAGTGAGTAATGGAACTTTTTAGGTCTACTTGGCATGCCACTG
CAACTTACTGTTAACTCTTACTGCAGTTATATTTGTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4887 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g47180.1	575	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g18450.2	406
Arabidopsis v10	AT1G54610.2	573	Protein kinase superfamily protein \| chr1:20393962-20396902 REVERSE LENGTH=573