barSeed - Barley Seed Development Database

Probe CUST_32448_PI390587928

Source Contig U35_7978

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32448_PI390587928	Hv_44K_v2	GGGAGGCGTTGTTCGTGCTCGCGCAGCTGCGACGGAAGCTCGAGAGCCTCCCGGCGGACA	455	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354437	1521	7e-23	436 - 495	98	59 / 60	plus	ABC08699
MLOC	MLOC_20686.1	756	7e-23	97 - 156	98	59 / 60	plus	ABC08699
JLOC1	JLOC1_14343.1	442	4e-23	97 - 156	98	59 / 60	plus
Harvest21	ABC34803	427	3e-25	368 - 427	100	60 / 60	plus
Harvest35	U35_7978	515	3e-25	456 - 515	100	60 / 60	plus

Contig Sequence (515 bp)

>U35_7978 515 Hv_44K_v2
TCGAGCACTGTTGGCCTAGGGACTGTCGCGGCTGCGGTCTCGCGGGGTTCCACTTCTTCA
CCAACCACACTCCCCTCCTCTCCTCTCCTCCGGGAGGTCCACGCCCGCCCCCGGCCTCCG
ACCGCCTCCCGCATCCACCGCCATGGCCTTCTCCACCCCCAACTCCCTCTCCGCTTCCGC
TTCCGCTTCCAGCCCCGCCTCCCCCTTCCACCTCCGCCTCCAGCCGCAGCCCTTCCTCCG
CCTCGCCGCCCTCCCCTTCCACCGCTCCCTCCCGCTCCACCTCCCCGCCCTCCGCCTCAC
CCGGCCCCTTCTCCCTCCCCTCCCGCTCGCCTCCTCGGGCGGCGGCAGCAACATCGGCTC
CGGCGGCGGCGGAGGCGATGACGACCTCCCCTCCGGCGGCGGCGGAGGAGACGAGGACGA
GGGCGAGGGCGGCAACGACGCGTCGGTAAACAGGAGGGAGGCGTTGTTCGTGCTCGCGCA
GCTGCGACGGAAGCTCGAGAGCCTCCCGGCGGACA

Homology of Contig U35_7978 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None