- Probe CUST_32448_PI390587928
- Source Contig U35_7978
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_32448_PI390587928 | Hv_44K_v2 | GGGAGGCGTTGTTCGTGCTCGCGCAGCTGCGACGGAAGCTCGAGAGCCTCCCGGCGGACA | 455 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK354437 | 1521 | 7e-23 | 436 - 495 | 98 | 59 / 60 | plus | ABC08699 |
MLOC | MLOC_20686.1 | 756 | 7e-23 | 97 - 156 | 98 | 59 / 60 | plus | ABC08699 |
JLOC1 | JLOC1_14343.1 | 442 | 4e-23 | 97 - 156 | 98 | 59 / 60 | plus | |
Harvest21 | ABC34803 | 427 | 3e-25 | 368 - 427 | 100 | 60 / 60 | plus | |
Harvest35 | U35_7978 | 515 | 3e-25 | 456 - 515 | 100 | 60 / 60 | plus |
Contig Sequence (515 bp)
>U35_7978 515 Hv_44K_v2 TCGAGCACTGTTGGCCTAGGGACTGTCGCGGCTGCGGTCTCGCGGGGTTCCACTTCTTCA CCAACCACACTCCCCTCCTCTCCTCTCCTCCGGGAGGTCCACGCCCGCCCCCGGCCTCCG ACCGCCTCCCGCATCCACCGCCATGGCCTTCTCCACCCCCAACTCCCTCTCCGCTTCCGC TTCCGCTTCCAGCCCCGCCTCCCCCTTCCACCTCCGCCTCCAGCCGCAGCCCTTCCTCCG CCTCGCCGCCCTCCCCTTCCACCGCTCCCTCCCGCTCCACCTCCCCGCCCTCCGCCTCAC CCGGCCCCTTCTCCCTCCCCTCCCGCTCGCCTCCTCGGGCGGCGGCAGCAACATCGGCTC CGGCGGCGGCGGAGGCGATGACGACCTCCCCTCCGGCGGCGGCGGAGGAGACGAGGACGA GGGCGAGGGCGGCAACGACGCGTCGGTAAACAGGAGGGAGGCGTTGTTCGTGCTCGCGCA GCTGCGACGGAAGCTCGAGAGCCTCCCGGCGGACA
Homology of Contig U35_7978 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |