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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_32446_PI390587928Hv_44K_v2TAGGCATTTCGCCGATGCTTATTTGGAGGAATGCCATTTTGGAAGAAGATGTTCAAAAAA607GeneList: midnightblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.4490.6320.7801.3751.9182.657
Raw 65.277152.271158.083438.835208.126317.296



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC200856783e-2512 - 7110060 / 60minusABC20085
Harvest35U35_79806783e-25608 - 66710060 / 60plus



Contig Sequence (678 bp)

>U35_7980 678 Hv_44K_v2
TCCAACTTGTAGCCATGCTATGTGCATTAAATGCTATCGTGACTGGAGATCAAGATCCCA
GTCCTGTCCATTCTGCCGGGACAGCCTCAAGAGGGTCAACTCCGCCGACCTCTGGATATA
CACGGATAACAGGGACATAGTCGACATGGCGACGGTCCGAAGAGAGAACCTGAGGCGTCT
CTTCATGTACATAGATAAGTTGCCCACAGTGATCCCTGAATCTGTTTTTGAGGTATACGA
TTCCCACGTAAAGTGACCTTGTGCTCTGTGCTACACCGATTGTTCATCAGTGGGGTGCTG
CTAGTGCTGTAGACATTGCCGGTTGTTCATCAGTTGGGTGCTGCTAGTGCTAGTGCTGTA
GACATTTGTGGAGCCCCGGGTGCCGGTTGCTGCGAGCTTATGAACGCTCCGAGCAGCTCG
CCGGGGAGGCTCCGTATGTTATGTAATGTAAGTTAATATATCTATGTAAATTATTGTCAG
TTGTATCCACCCGGCCTGTGTGATGTGTTAGGGGTGTCTGACGCCTTGGGCATGTAAGGA
ATGAATCTTTGTTTTTTTTTTTTTTTCTTTTTCTTTTGCGGGGATGTAAGTAATGGATCA
TTGGTTTTAGGCATTTCGCCGATGCTTATTTGGAGGAATGCCATTTTGGAAGAAGATGTT
CAAAAAAAAAAAAAAAAA



Homology of Contig U35_7980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os07g46700.32438e-54protein|zinc finger, RING-type, putative, expressed
Brachypodium v1_2Bradi1g18760.12433e-54
Arabidopsis v10None