barSeed - Barley Seed Development Database

Probe CUST_32444_PI390587928

Source Contig U35_7982

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32444_PI390587928	Hv_44K_v2	GCTGAAGGTGTTTTGTATACATTGTGATATGTTGCAACTCTCGTATCTTTACACCAAAAA	1056	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.351	1.542	1.189	0.829	0.337	0.312
Raw	201.768	362.118	245.313	269.714	37.662	38.925

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC44573	575	3e-25	12 - 71	100	60 / 60	minus	ABC44573
Harvest35	U35_7982	1127	3e-25	1057 - 1116	100	60 / 60	plus

Contig Sequence (1127 bp)

>U35_7982 1127 Hv_44K_v2
GGAGATTCAACAGGATAAGCCAAAAGGACAGCCTCTTCTCTGAACCTCTGGTGCAAGGAA
TGTGTAGTGATCTTCATAAAGCTTATGAGGGGAACTACCCTCATGTGAGTGACTCTGATG
CTCAGCCTGCCGATGTTGTAAATGTTCTTGACGAGGTTCAGCCTGCCGATGTTGTGAATA
TTCATGACGAGGTTCAGCCTGCCGATGTTGTGAATGATTGTGATGAGGATGCACCTATAG
GAAATGCAGATACACAGGAGCTTCAACCTCAGGTCACCTCAAAATCAACAGGAAATGGAG
AGGCAACGCCATTTGATTTGTCACCCGAGCTCCCTCGCTTCTCTCCACAGAAGGGTCTAT
CTCCAGTAAGAGAAGAAGATCACACCCCTTTTGAAACCTCTGGACGAAGTGGAACCCCAT
GGTCAGGACTTGGAGGAACCGGTGCTACTGTACCAGTAACACATTGCAGTTATGCATCAC
CTGGAAAATATACTATTGAATCTGATTTCCCATTTGGTACTGATGATCTTGATGAAGATC
TACCAGAGTTTCCTGGGCTGATGAATACCCCTAGCATGATATCCAGTGTGGGTACCAGCA
CCACAGGATTAGGCAGCATCATGTCTACCAGGACAAGGGCTGCCGCACAGTACTTCAAAT
GTATGATGTCTTCAGCCACTTCAGAAGACCAGCAAGGGAAATTCAGTTTAAACAGAATCT
TGGACGGGAGGACAAAGAAGCAAGCTGCAAGAATGTTCTTTGAAACGTTGGCCCTGAAGA
GCTATGATTATATTGATGTCTATCAGGAAGAGGCATATGGTGATATTTCAGTTTCGGTTA
GACCGTCACTCTCCAGTGCCAAACTTTGAACTACTCTGTTTTCCTTCAGTTCAAGTAGAC
TTTTTTGTTTTGTTTTCCTGGCCTGTCTAATATTAGTCCTGGTTTAGAATAGTGCTATGT
TATTTTACGCCTTCTCCTAATGTTCCTGTAATATTTGGCGTGTATCTCAGTTTCTGTTAG
TTCTGTTCAGAACCTGGCAATGCTAGTGTGAGTGGAGCTGAAGGTGTTTTGTATACATTG
TGATATGTTGCAACTCTCGTATCTTTACACCAAAAAAAAAAAAAAAA

Homology of Contig U35_7982 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g16610.1	729	1e-66	protein\|Rad21 / Rec8 like protein, putative, expressed
Brachypodium v1_2	Bradi3g19347.1	678	1e-87
Arabidopsis v10	None