barSeed - Barley Seed Development Database

Probe CUST_32443_PI390587928

Source Contig U35_7983

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32443_PI390587928	Hv_44K_v2	TCCTGTCCTGACTCCTGAGAACCCTGCGGATTAGAACGATGGGATGCTTCGCGTTCAAGG	153	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7274.2	2864	2e-24	407 - 466	100	60 / 60	plus	ABC17408
MLOC	MLOC_7274.1	1754	2e-24	407 - 466	100	60 / 60	plus	ABC17408
MLOC	MLOC_7274.3	2068	2e-24	333 - 392	100	60 / 60	plus	ABC17408
MLOC	MLOC_7274.4	2329	2e-24	333 - 392	100	60 / 60	plus	ABC17408
MLOC	MLOC_7274.5	1966	2e-24	271 - 330	100	60 / 60	plus	ABC17408
MLOC	MLOC_7274.6	1798	2e-24	271 - 330	100	60 / 60	plus	ABC17408
MLOC	MLOC_7274.7	1986	2e-24	271 - 330	100	60 / 60	plus	ABC17408
JLOC1	JLOC1_4795.3	1817	8e-25	161 - 220	100	60 / 60	plus
JLOC1	JLOC1_4795.2	1997	8e-25	298 - 357	100	60 / 60	plus
JLOC1	JLOC1_4795.1	2266	8e-25	298 - 357	100	60 / 60	plus
Harvest21	ABC20449	589	3e-25	154 - 213	100	60 / 60	plus
Harvest35	U35_7983	600	3e-25	154 - 213	100	60 / 60	plus

Contig Sequence (600 bp)

>U35_7983 600 Hv_44K_v2
CGCACCCGCTCGTCTCTGTCAAAGGCTAAACCCGCTTCCTCTTGATTCAGCCCACCGTGC
CGGAATTCTGTTTCGGCTTTCCTCATTCCCTTCTGAACCCCTTCTTCTTGGACTGCTGCT
TCGTCTGTCTCACTCCCATGAACAGCAAGCTCCTCCTGTCCTGACTCCTGAGAACCCTGC
GGATTAGAACGATGGGATGCTTCGCGTTCAAGGGCGGCAAGAGCAAGCCGGCGGCGGAGC
CCAAGCCGGACGGGCCGAAGCGGAGCAGGGCGTCGTCCTCGTCGGCGTCGACGCCGACGA
GGAGCATCCAGGAGCTCTCGGAGGAGCGGGGCGCGGCGCGGCTGCGCGTGTTCGGGCTGG
AGGAGCTCGGCAGCGCCACCAACGGCTTCAGCCGCGCGCTCAAGGTCGGCGAGGGCGGCT
TCGGCTCCGTCTACCGCGCCTTCTTCCGCTCCGCCGCCGGCGGCCGCGTCGTCCTCGCCG
TCAAGCGCCTCAACCAGCGCAGCCTGCAGGGGCACAAGCAGTGGCTCGCCGAGGTGCAGT
TCCTGGGCGTGCTGGAGCACCCGAACCTGGTGAAGCTCGTCGGCTACTGCGCGGTGGACT

Homology of Contig U35_7983 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g50100.1	382	6e-56	protein\|tyrosine protein kinase domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g35157.1	407	2e-57
Arabidopsis v10	None