barSeed - Barley Seed Development Database

Probe CUST_32440_PI390587928

Source Contig U35_7986

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32440_PI390587928	Hv_44K_v2	CCAGACGCTGGCTTTTTTGTACAGTTATTCTATATAAAATCCACCATAACATTCAACCAA	619	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70636.1	3715	6e-24	4 - 62	100	59 / 59	minus	None
MLOC	MLOC_70636.2	3575	7e-23	1 - 57	100	57 / 57	minus	None
JLOC1	JLOC1_46886.2	3580	3e-24	3379 - 3437	100	59 / 59	plus
JLOC1	JLOC1_46886.1	3754	3e-24	3553 - 3611	100	59 / 59	plus
Harvest35	U35_7986	692	3e-25	620 - 679	100	60 / 60	plus

Contig Sequence (692 bp)

>U35_7986 692 Hv_44K_v2
GCAACTGGCGCGCTTGTCCAGCGTCAAGTATTGATGAGCGAGGACTCAAAGATCTCTCCC
TCAGAACTGGAAAATGCAAGCTTGGAACTGTTCAGCACGCTCACGGAGCTACTAGGCAGT
TTTTCTGATTTTGGCACAGATAAGATCATCGAGGTGATGGTCCGTTCATCGACCTCGGCC
GGCCCTTGTTCGGATGAAATGGTTGAGAACAGGAAGCAGATGTTGAGCAGGGTCTTCCTC
AAAAGCCTCCAGACTGATGACACTGTCTTCAGGAAGGTGTCTCGATCTGTTTACTGCACG
TTCCGTGCAATCACCCTGGGTGGCAACGGGACGAAGGGCAGGAAACTCGCCGAGGCGGCC
CTGGGGCGCATAGGGGCGACAAAGCTCACCGACCGCGTAGTGAAGGCAGCGGAAGTGCTA
ATCAAAGTAGCAACAATATCAGAGCAGGTTCATGGCCCGTGGTACAGTCGTCTCCTGTAA
ATGTCTTGCTGGTTTTGTGAATCCGGGGTGGGTGATCATAGCCGCTGGGTCACACATCGC
GATGCATCCCCGGTGGAAAATTTCTGCAATAGTTATTTTGTACGATTACTGGAACAGTCC
TGTTTTGTTTGTCCAAGGTCCAGACGCTGGCTTTTTTGTACAGTTATTCTATATAAAATC
CACCATAACATTCAACCAAAAAAAAAAAAAAA

Homology of Contig U35_7986 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35080.6	759	3e-55	protein\|T-complex protein 11, putative, expressed
Brachypodium v1_2	Bradi3g45830.1	1192	9e-63
Arabidopsis v10	None