barSeed - Barley Seed Development Database

Probe CUST_32434_PI390587928

Source Contig U35_7992

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32434_PI390587928	Hv_44K_v2	TGTGTAGTGTAATATTCATTCTGAAGGAGAATGTTTTGCACAGGGAATCCGTTTCATGTT	608	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_82073.2	1491	2e-24	25 - 84	100	60 / 60	minus	ABC07362 ABC16993
MLOC	MLOC_82073.1	876	2e-24	37 - 96	100	60 / 60	minus	ABC16993
JLOC1	JLOC1_54591.1	1580	8e-25	1409 - 1468	100	60 / 60	plus
Harvest21	ABC16993	705	3e-25	609 - 668	100	60 / 60	plus	ABC16993
Harvest35	U35_7992	705	3e-25	609 - 668	100	60 / 60	plus

Contig Sequence (705 bp)

>U35_7992 705 Hv_44K_v2
GCCCGGATGACCCCAAGAATATTAAGAAGACCATTCAGCGAATAGCAGCAGTCGACTATA
AGATCCCAGACAATATTCTTATATCTGCTGAATGCCGACAGCTCATTTCGCTCATCTTTG
TGAGCAATCCAACGAAGAGAATCACCATGAAAGAAATAAAGAGCCACCCATGGTTCTTGA
AGAACTTGCCGCGGGAGCTCACGGATGAAGCGCAGTCTGCCTACTACACGAGGAGCAGCA
GCGTGCCTTCTTTCTCGAAGCAAACAACCCAGGAAATCATGGCGATTGTGCAAGACGCAA
AGAAGATGCCAAGATCACTCACATCAGGTTATGACTACGCCGACGAGTTATCGGATGAGG
AGGAAAACCGAGCGAGGGTCAGCGTACCAGAGCAGATTGACGAAGAAGATGAGTGTGACA
AGAAGGTTAGGGAGGTTCTCGAGAGCGGGGAGCTGGATATGAGCTCCTTGCGCATCTGAC
CGCTGCTTGTGATGTGGGACTGGGAGGATGTAGATAATTGGACATTTGGTTGTTTGGTTT
TGTTAGGATGTAGTATGATTTTCTGTTGCAGAGGTGATTTGTTTGGGCTTTCCTGTAACG
TAATGTAGTGTGTAGTGTAATATTCATTCTGAAGGAGAATGTTTTGCACAGGGAATCCGT
TTCATGTTTTTTTACTTCCTTTTTTGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_7992 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g64970.1	361	6e-61	protein\|CAMK_CAMK_like.11 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi2g56267.1	362	5e-59
Arabidopsis v10	None