barSeed - Barley Seed Development Database

Probe CUST_32428_PI390587928

Source Contig U35_7995

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32428_PI390587928	Hv_44K_v2	GAAAATCATCAGTTGCAGATGGGCTTAGCATCCATGACCAGGATGAAGCTTGGATGAAAC	431	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	10.083	6.975	1.318	0.506	0.461	0.503
Raw	17496.390	16816.820	3084.180	1620.919	581.336	721.100

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC20527	481	3e-25	420 - 479	100	60 / 60	plus
Harvest35	U35_7995	494	3e-25	432 - 491	100	60 / 60	plus

Contig Sequence (494 bp)

>U35_7995 494 Hv_44K_v2
GGACGCAATGGCCGCCGTAGCTCTTCTCGCCGCGCGTCCGGCTCCGGCGCCTGGCGGCCC
GGCGAGGAAGGCGGGGCCTTTACCGGCCGCGGGCTGGCGTGTCCGCCCGCACTCCCTTCG
CTCCGTCCCGCCGCCCGGAGTAGCGGGGAGGGGCGGGGCCAGGGCGGCGAGGCCCACGCG
CGCCGCGATGGGCGGCGGCGACCTGTTCGCCCTCGACTTCGACGGCGTCTTCTGCGACAG
CTGCGGCGGGAGCTCCCTCTCCGCCGTCAAGGCCGCCAAGGTGAGGTGGCCTTGGGTGTT
TGAGCGGGTCGACGCCGCCATGGAGGAGTGGATTGTGGAGCGGATGCACACCCTTCGTCC
AGTGATAGAAACAGGATATGAGAACCTGTTGCTTGTAAGGTTGCTTGTTGAGATCCAGAT
ACCCTCTGTTCGAAAATCATCAGTTGCAGATGGGCTTAGCATCCATGACCAGGATGAAGC
TTGGATGAAACTAA

Homology of Contig U35_7995 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None