barSeed - Barley Seed Development Database

Probe CUST_32425_PI390587928

Source Contig U35_4004

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32425_PI390587928	Hv_44K_v2	AAAGAACCTTTGGTTGAAGAATACAGTGTCGCTGCTTCGCTGTGGAAGCTTAGCTCTTGT	695	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50786.2	2703	2e-24	516 - 575	100	60 / 60	minus	ABC09046
MLOC	MLOC_50786.3	2817	2e-24	626 - 685	100	60 / 60	minus	ABC09046
MLOC	MLOC_50786.4	2824	2e-24	626 - 685	100	60 / 60	minus	ABC09046
MLOC	MLOC_50786.1	2765	2e-24	659 - 718	100	60 / 60	minus	ABC09046
JLOC1	JLOC1_32393.1	2824	8e-25	2048 - 2107	100	60 / 60	plus
Harvest21	ABC09046	1411	3e-25	696 - 755	100	60 / 60	plus	ABC09046
Harvest35	U35_4004	1411	3e-25	696 - 755	100	60 / 60	plus

Contig Sequence (1411 bp)

>U35_4004 1411 Hv_44K_v2
GAATATCTATTTATGGGAGAAAGAAAAGCGAGTGGGATCAGATGGCAAGTTGGATAGTGA
ATAACGAATTGTATAGCGAGAATGTTGTTTGGTTAATCCAGATTCCTCGGATTTACAATG
TATACAGGGAGATGGGCACGATTAATTCATTCCAGAACCTCCTCGACAACATTTTTCTTC
CACTTTTTGAAGTGACTGTTGATCCTGCTTCACATCCTCAGCTGCACGTTTTCTTGGAAC
AGGTTGTTGGCTTGGATTTGGTGGATGATGAAAGCAAACCAGAAAGGCGCCCAACAAAAC
ACATGCCAACACCTGAGCAATGGACTAATGTTTTCAATCCAGCCTATGCATATTATGTAT
ACTATTGTTATGCTAACCTGTACACACTGAACAAGCTTCGTGATTCCAAGGGCATGACAA
CGATCAAACTTCGTCCACACTGTGGGGAGGCTGGAGATATTGATCATCTCGCTGCAGCAT
TTCTCACTTCTCACAATATTGCTCACGGGGTGAACTTAAAGAAGTCCCCTGTCCTCCAGT
ACTTGTATTATCTTGCTCAGATTGGTCTTGCAATGTCTCCTTTGAGCAACAACTCATTGT
TTATTGACTACCACCGGAACCCTTTCCCAACATTTTTCCTAAGAGGCCTGAATGTTTCTC
TCTCAACCGACGACCCTTTGCAAATTCACCTAACAAAAGAACCTTTGGTTGAAGAATACA
GTGTCGCTGCTTCGCTGTGGAAGCTTAGCTCTTGTGACTTGTGTGAGATAGCCAGGAATT
CTGTGTACCAGTCCGGTTTCTCTCATAGGCTAAAGTCACACTGGATTGGTAGAAACTACT
ACAAAAGAGGTCCCGACGGCAATGACATCCACCAGACAAATGTTCCCCACATTAGGATCG
AATTCCGACACAACATTTGGAAAGAGGAGATGGAGCTGATACATTTCGGAAACGTTAACC
TACCGGAAGAAACCGACAGGTGAAGATGTTGCAGCAGTTCTCAAAGCCCCGCGCACCCAT
GGTCAGGCATTCCGTCCATCCCGTTTTCTGGCCTTCGGAGAAGCGAACCTATGCTGGTCT
GTGTAGAAGAGAAGAAAAGCGCCCGCCCCAGTACCTTTTCGATGAGTCTTTTACTCGTGT
TACCTGTATAGGCAGATATATCAGCATGGAAGGATAAGGAGAAGACACTCTAGGATTCCA
GTGGAGACACACGCACACACTCATCAGGCTCGCTCCCTGGGTACATTAGTTAGTGACCTT
CCTTGGAATAAAATCCTTGCATCTTTTGCTTTTATTACCCAGATAGTACTACGTAGATTT
TACAGCATGTTAAATCTGGTAATTTATTCGCGTCGCCTCCCTCACTCATTTATATCCTAA
TATTCGGTATTATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4004 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g49270.2	816	protein\|AMP deaminase, putative, expressed
Brachypodium v1_2	Bradi1g16620.1	832
Arabidopsis v10	AT2G38280.1	839	\| Symbols: FAC1, ATAMPD \| AMP deaminase, putative / myoadenylate deaminase, putative \| chr2:16033767-16038793 REVERSE LENGTH=839