barSeed - Barley Seed Development Database

Probe CUST_32421_PI390587928

Source Contig U35_4006

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32421_PI390587928	Hv_44K_v2	TGTGATACCAACATATGGCAACTTCGAACGTATTTTATGACAAATTTAATGACATGGGGC	1233	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.054	0.327	1.203	1.474	0.904	1.111
Raw	21.915	212.255	660.992	1296.705	273.302	364.973

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70242.1	689	6e-24	1 - 59	100	59 / 59	minus	ABC16070 ABC22810
JLOC1	JLOC1_46610.1	3217	8e-25	126 - 185	100	60 / 60	minus
JLOC1	JLOC1_46609.1	1900	8e-25	1334 - 1393	100	60 / 60	plus
Harvest35	U35_4006	1319	3e-25	1234 - 1293	100	60 / 60	plus

Contig Sequence (1319 bp)

>U35_4006 1319 Hv_44K_v2
CTGCACTGCAAACGAGACACCCCGCGCCGCGTCAAGAACACACAGCACAGCACAGCGCAG
GCACGGTCTGGGAGAGTGGCAGCGGCGAGGGCGAGCCTCCAGCCATGGCGGTGAGCAACA
ACATCACGGCGTGCGTGACGCTGATGGCGCTCATCTGCGCCGTCCCCGTCATCGCCTCGG
GCGTCTGGTTCGCGTCGGCTCAGGGGGAGGAGTGCGCGCGGCTGGCGCGCTGGCCAGTGG
CCATCCTGGGCGGGCTCATCCTGCTGGCGGCGCTGGCGGGTTTCGTCGGCGCCTACTGGA
ACCGCCGCCGCCTCCTTGCCTTCTACCTCTTCGCCATGGGGGCGCTCATCGCCCTCCTCA
TCGCGCTCCTCGTCTTCGCCTTCGCCGTCACCCGCGGCTCCGGCGCCTACCCGGTGCTCG
GCCGCGAGTACGACGAGTACCGCCTCGACGGCTTCTCCATGTGGCTGCGCGGGTACGTCT
CCGACGACCCCGCCAGGTGGGAGGGGATCAGGTCCTGCATCGCCGTCTCTGACACCTGCA
AGAAGCTCGCCCGACAGGCCAGCTTCGTCACCGCCGACCAGTTCTACCAATCCCACCTCA
CGCCGCTCCAGTCGGGCTGCTGCAAGCCCCCGTCGGTGTGCGGGTTCGGGTACGTGAGCC
CGACGGTGTGGACGAACCCGGCGCGGCCCGCGGCCGACCCGGACTGCGGCCTGTGGAGCA
ACGACCCGGCGCAGCTGTGCTACGAGTGCGAGTCGTGCCGCGCGGGCCTCCTGGCGGCGC
TGCGGAGCCAGTGGCACAAGGCCAACATCGCGCTCGTCGTCGCCACCGTCTCGCTCCTCT
TCCTCTACCTCATCGGTTGCAGCGCCTACAAGAACGCGCACGCCGAGGCCATCTACCGCC
GCTACAAGTGGTGATTCCGATCCCATCACTCAGGACCGCCATCGCCGATTTGCCGCATGT
AATATGTTTGCTTCATCCAGTATTATTATTAGTAGCTTGGTACCTGGTAGTAAGCTAGTA
GGGAATGTTTCCTGGTTTATGGTTGCCCATGCATGTTTCGTGGAGAATTTTAGCGAGACG
CATGCGCTGTTGGTGTTGATGTCAATGTTTTAGTAATATGCAGTAGAGTTGTTCTTCAGA
TTTAAAAAAAAAAAAAAAAATTTTTATTTGCAAATGATAGGTACCACATGTGTGGCACCA
AGCACTACTCAGGACCTTAACAAGTGTCACATATGTGATACCAACATATGGCAACTTCGA
ACGTATTTTATGACAAATTTAATGACATGGGGCAATTTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4006 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g12750.1	271	2e-149	protein\|tetraspanin family protein, putative, expressed
Brachypodium v1_2	Bradi3g08200.1	270	3e-160
Arabidopsis v10	AT2G19580.1	270	5e-83	\| Symbols: TET2 \| tetraspanin2 \| chr2:8472393-8475021 REVERSE LENGTH=270