barSeed - Barley Seed Development Database

Probe CUST_32418_PI390587928

Source Contig U35_4008

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32418_PI390587928	Hv_44K_v2	TTCAGTGATCTGTTAGTGTGTACTTTAGTTTGTCAGCTGCTGTACCGAGTACCCGACTTC	573	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64294.1	2006	2e-24	148 - 207	100	60 / 60	minus	ABC09045 ABC39972
JLOC1	JLOC1_42205.1	2126	8e-25	1791 - 1850	100	60 / 60	plus
Harvest21	ABC09045	756	3e-25	575 - 634	100	60 / 60	plus	ABC09045
Harvest35	U35_4008	755	3e-25	574 - 633	100	60 / 60	plus

Contig Sequence (755 bp)

>U35_4008 755 Hv_44K_v2
GGGATAACAAAATTGGCGGAGTACCCGTAGTAGAAGGTCCCAATAGGAAACTTGTCGGTA
GTGTGAGCATAAGGGACATTCGCTTCCTGTTGCTTAGGCCTGACTTATTTTCTGATTTCA
GGCATCTTACCGTCTTGGAGTTCATGAAGGCTCTAGGCTCCACTCTTACTGATTCAGGGG
GTGACGTACTGGTGAAGCCGCCGCTCACCTGTGCACCTGATGCTTCTATGGGCAGCGTGA
TTGACAGCATCGGATCGAGGATAACACACCGGATATACGTGGTGGATGGCGACTTTGAGG
TGGTCGGTGTTGTGACACTGCGAGACGTGATCTCCTGCTTCATCCACGAGCCCCCTGGCT
TCTGCGACAGCTATCTTGTTTCAGCGATGGAGAAGCTCGAGGACAAAGCGGATGTCGATT
CTTCCGTCGAGAACAGCTGAGCTGCTCCCGGGAGTGCATGACGGCCGAAATGACAGGCAA
GGTTAGTGAGCACTGAGCAAGTCTTGTAGTTGGACTGGTTCGTTCAGGTGGTGGTGTTGA
CACAGTAAATTCTGTGTGGGGGTGACAAGGCATTTCAGTGATCTGTTAGTGTGTACTTTA
GTTTGTCAGCTGCTGTACCGAGTACCCGACTTCGCTGATCCGCACCTGTTTCCTGGTGCA
AACACTGCAGTGGCGATTCTGTGATTTGTAAAAACGTTAACGTACCAAAAGTTTGCCTAA
TCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_4008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g40420.3	229	7e-66	protein\|CBS domain containing membrane protein, putative, expressed
Brachypodium v1_2	Bradi2g42080.2	323	3e-67
Arabidopsis v10	None