barSeed - Barley Seed Development Database

Probe CUST_32415_PI390587928

Source Contig U35_4011

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32415_PI390587928	Hv_44K_v2	GCTCTGTTGTACCTAGACTTGAACAACCAAATCCAAAATAATTTCCGAGTTTGCAAAAAA	1947	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.081	2.012	1.303	0.870	0.253	0.194
Raw	759.816	2140.529	1204.749	1261.100	133.573	108.900

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_42626.2	1987	6e-21	1829 - 1881	100	53 / 53	plus
JLOC1	JLOC1_42626.1	2242	6e-21	2084 - 2136	100	53 / 53	plus
Harvest21	ABC10937	2023	2e-21	1948 - 2000	100	53 / 53	plus	ABC10937
Harvest35	U35_4011	2018	3e-25	1948 - 2007	100	60 / 60	plus

Contig Sequence (2018 bp)

>U35_4011 2018 Hv_44K_v2
CCTGCAACTGGTGAGACGACCCACACAACGCACACCCGCGCGCACGAGAGACGCACGCAC
AGCGACAGCCAACCGAGAGAGAGAGACCGACCAGCCGGCGCGGCGATCCGATCGCGATGG
CCACGGCGACGGCGGACCCGCGGAGCGGCTACTGCGCCGCGACGGGCGCGTTCCGGAGCA
AGCGCGCGGTGGTGCCGCTCCCGGCGGACCGTGACCTGGACGTGGTCACCTTCCTGGCCT
CCCGCCGCCACTCGGGCGTCGTCGCGCTCGTCGACGCCTCCACGGGCCGCCGCACCACCT
TCGCCGACCTCTGGCGCGCCGTGGCCGGGGCCGCCACCGCGCTCGCCGCGCCGCCCTTCG
GCCTCCGCAAGGGCCACGTCGCGCTCATCCTCTCCCCCAACTCGGTCCACTTCCCCGTCG
CCGCGCTCGCCGCCATGTCGCTCGGCGCCGTCGTCACCACCGCCAACCCGCTCAACACCG
CCGCCGAGGTCGCCAAGCAGGTCGCCGACGCCCGCCCCGTCCTCGCCTTCACCACCCGCG
ACCTCCTCCCCAAGCTGCCCCGCGGCCTCCGCGTCGTGCTCCTCGAGCCTCCCTCCCCCG
CCGACGACCCGCGGATCGTCGCCACCATCGACGAGATCTCCGCCACCACGCCCGACCCCG
CGCGCCGACGGGACCGCGTCACGCAGGACGACCAGGCCACGCTGCTCTACTCCTCCGGCA
CCACGGGGCCCAGCAAGGGCGTCGTCGCCACGCACCGCAACCTCATCTCCATGGTCCAGA
TCGTCATGAACCGCTTCCGCCTCGAGGACTCGGACACCACGGAGACCTTCCTCTGCACGG
TGCCCATGTTCCACGTCTACGGCCTCGTCGCCTTCGCCACCGGCCTGCTCGGCTGCGGCG
CCACCATCGTCGTGCTCTCCAAGTTCGAGCTCCCCGAGATGCTGCGCTGCATCACCGCCT
ACGGGGTCACCTACCTGCCGCTCGTGCCGCCCATCCTCGTCGCCATGGTCGCGCACCCCA
AGCCGCTGCCGCTCGGCAACCTGCGCAAGGTGCTCTCCGGCGGCGCGCCGCTAAGCAAGG
AGCTCATCGAAGGCTTCAGGGACAAGTACCCGCAGGTGGAGATCCTGCAGGGGTACGGGC
TGACCGAGAGCACGGCCATCGGCGCGTCCACGGACTCGGCCGAGGAGAGCCGCCGGTACG
GGACGGCCGGGCTCCTGTCGCCCAACACCGAGGCCAAGATCGTCGACCCGGAGACAGGCG
AGGCGCTGCCGGTGAACCGCACCGGCGAGCTCTGGATCAGGGGACCCTACGTCATGAAAG
GATACTTCAAGAACACAGAGGCAACACAGTCGACGGTGACGCCCGACGGATGGCTCAAGA
CCGGTGACCTATGCTACATAGACGAGGATGGGTATCTCTTCGTGGTGGACCGTCTGAAAG
AGTTGATCAAATACAAAGGCTATCAGGTGCCTCCAGCAGAGTTGGAAGCTCTTCTGCTGA
CCCATCCAGAGGTTTCCGATGTCGCTGTTATTCCGTTCCCAGACAGGGAGGTCGGTCAGT
TCCCGATGGCCTATGTCGTGAGGAAGAAAGGGAGCAATTTGTCAGCGCAGGAGGTGATGG
AGTTTGTGGCGAAACAGGTAGCACCTTACAAGAAGGTGAGGAAGGTGGCGTTCGTGACAG
ACATCCCCAAGAATGCGTCTGGCAAGATACTGAGGAAGGATCTTATCAAGCTCGCGACCT
CCAAGCTGTGAAATGTGGACCGTTATCCTGCTCTGTGTATTATCCCTTGAAGTGTCAATT
GGTTCATCCTTGGATCTTCATCATTGTACAACTATTGTTTTCTTTTTGCCCTTCGTCCCA
ATAGCCCTCTGACTATCTGTAACTGAAGGATCTCAGCGGCTGTGTACTAGTACATGAGGT
CTCTGTGTAAATTGGTTCTATATACAAGCTCTGTTGTACCTAGACTTGAACAACCAAATC
CAAAATAATTTCCGAGTTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4011 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g04000.1	553	protein\|AMP-binding domain containing protein, expressed
Brachypodium v1_2	Bradi1g76280.1	552
Arabidopsis v10	AT1G20510.1	546	\| Symbols: OPCL1 \| OPC-8:0 CoA ligase1 \| chr1:7103645-7105856 REVERSE LENGTH=546