barSeed - Barley Seed Development Database

Probe CUST_32414_PI390587928

Source Contig U35_4012

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32414_PI390587928	Hv_44K_v2	ATCACCGCCTGTATTATGATGCTAGCCTATGCTCTTACATATATATTTGAAGTCGTATTT	1191	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.725	1.984	0.976	1.244	0.673	1.086
Raw	108.619	202.610	83.925	176.108	31.816	56.208

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10202.1	1415	2e-24	49 - 108	100	60 / 60	minus	ABC09342 ABC09343
MLOC	MLOC_10203.3	1263	2e-24	18 - 77	100	60 / 60	minus	ABC08944 ABC09342 ABC09343
MLOC	MLOC_10203.1	1233	2e-24	53 - 112	100	60 / 60	minus	ABC08944 ABC09342 ABC09343
MLOC	MLOC_10203.2	1262	2e-24	53 - 112	100	60 / 60	minus	ABC08944 ABC09342 ABC09343
MLOC	MLOC_10203.4	1328	2e-23	1 - 58	100	58 / 58	minus	ABC08944 ABC09342 ABC09343
JLOC1	JLOC1_6656.5	1346	8e-25	1129 - 1188	100	60 / 60	plus
JLOC1	JLOC1_6656.4	1485	8e-25	1268 - 1327	100	60 / 60	plus
JLOC1	JLOC1_6656.3	1403	8e-25	1186 - 1245	100	60 / 60	plus
JLOC1	JLOC1_6656.2	1374	8e-25	1157 - 1216	100	60 / 60	plus
JLOC1	JLOC1_6656.1	1804	8e-25	1587 - 1646	100	60 / 60	plus
Harvest21	ABC09342	1260	3e-25	1180 - 1239	100	60 / 60	plus	ABC09342
Harvest35	U35_4012	1272	3e-25	1192 - 1251	100	60 / 60	plus

Contig Sequence (1272 bp)

>U35_4012 1272 Hv_44K_v2
CAGCTCCTCTTCTTCATCATCACGCCCCACCCCTCCCTCTCCCTCTCCCTCTCCGGCCCG
AACAAAAAGAGCTCCTTCTACACCTCCCCACCTCCTCCTCGGACTTCCTTCCTTCCTTCC
TTCCATCCATCCAATGCCGCCGCCGAATCTCCAAGCGCGCGACTACATCGGCCTGGGCCC
TGCCGCGCCATCCTCCTCCTGCTGCTCCTCCTCGGGCGAGACGGGCCCGCACCTCGCGCT
CCGCCTCGGCCTGCCGGGCTGCGGCTCAGCGGACGAGGCCGCCGTCGACGCCGCGCTCAC
GCTCGGGCCCGCTCCTGCCCCGACACGGGGCGGCGCCAAGCGTGGGTTCGCCGACTCGCT
CCTCGACCGTACTGCCGGGGCGGGCGGGGAGGAGGACAAGACGAAGGGTGAATCCCCCGC
CGCCGGACCCGGAGCCGGAGCTCCTCCAGCCGCCAAGGCACAAGTTGTTGGATGGCCACC
TGTTCGGAGCTACCGGAAGAACACGCTAGCAGCCAATGCCACAAAGACCAAGGCGGAGAA
CCAAGGTAGAAGCGAGGCGGGATGCTGCTATGTCAAGGTCAGCATGGATGGAGCCCCATA
CCTAAGGAAGGTCGATCTTAAGACTTACTCCAGCTATGACAACCTTTCCCTGGAGCTGGA
GAAGATGTTCAGCTGCTTCATCACTGGCAAAAGCAGTTCCTGCAAAACATCAACAAGAGA
CAGGCTCACTGATGGTTCTAGGGCTGATGCTCTTCAGGACCAAGAGTATGTGCTGACCTA
TGAAGACAAAGACGCTGACTGGATGCTTGTGGGTGATCTTCCTTGGGACTTGTTTACCAC
TACTTGTCGGAAACTGAGAATCATGAGAGGCTCTGATGCTGCTGGAATGGTCTGAAGTGT
CTATACCATCTACTTGCAGCCCCAAGATAGCCGGAATGGCCACGCCAGAACAAACAAGCG
CCCGTCCTGGCCTCTCGCCCTCCTCAAGTCTCTGTCTGAATCACGCAAGTGTGGAATTTT
GAGTTAGCCCTGCAAGGGGGGCGATGGTTGTCTGAACTCTGAAAGTGTCTGAGCTGCTAG
TTTTATCTATCTACGTGTGTAGTGGAATATGTGCGTCCTACTGTAAAACCGTCCGTTTTT
GCAGACGCTGTGGCCTCGCCGTTGTAGATGGTATCTTTTGGTTCATGAAAGATCACCGCC
TGTATTATGATGCTAGCCTATGCTCTTACATATATATTTGAAGTCGTATTTTATGAAAAA
AAAAAAAAAAAA

Homology of Contig U35_4012 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48590.1	282	2e-92	protein\|OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed
Brachypodium v1_2	Bradi2g16850.1	270	7e-104
Arabidopsis v10	None