barSeed - Barley Seed Development Database

Probe CUST_32412_PI390587928

Source Contig U35_4015

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32412_PI390587928	Hv_44K_v2	AATGTGTGAAAGTAGGGAACCAATGGGTTGTACTGAATACATGCCCATCCTAGGTTATTC	1454	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369305	1429	2e-24	1347 - 1406	100	60 / 60	plus	ABC09735 ABC31551 ABC49833
MLOC	MLOC_80511.2	1327	2e-24	1203 - 1262	100	60 / 60	plus	ABC09735 ABC31551 ABC49833
MLOC	MLOC_80511.1	1833	2e-24	1709 - 1768	100	60 / 60	plus	ABC09735 ABC31551 ABC49833
JLOC1	JLOC1_53607.1	1253	8e-25	1129 - 1188	100	60 / 60	plus
Harvest21	ABC09735	1232	3e-25	1140 - 1199	100	60 / 60	plus	ABC09735
Harvest35	U35_4015	1562	3e-25	1455 - 1514	100	60 / 60	plus

Contig Sequence (1562 bp)

>U35_4015 1562 Hv_44K_v2
GGCTCCGCTCTCCGCTCCTCCCGCGTCCCAGATCACGCCGCCGCACACGTCTCCGCCGCC
GGACGGGTCAAGCGGCCATCACCGCTGCGGAGGCCGCCGCCACTGCTGGGAAAGCTTAAG
TGCCAGCAGCCATGTCCATCAGATCTCTCATCGCTGCATCCAGGTCCAGACATGCCCTCG
CCGCTGCCACCATCTCTCAGGCGACTTTCAGGGCGCACCAGCATGCCTGCGTGCCTCCTC
TGCTCTCGGGGCTTGGACCACTCGCACGGGCCTTCAGCTCAAGCGCTGCAGTAGCAGGTG
TCGGTTCAGGTGTCCCTGTCGCTGCTCGCGCAGATTTTGCCAAATGTGTACTCCAATGGG
TATTCTACTCTTATGGCTCCAGCAAATGAAGTGCTGATTCCGCCAGAACTTCTCTCTAGC
AAGACTGTCTGGACACCAGACCGAGAGCTTGGGCAGTATGAGGACCTAGTAGCTAGAGTA
ACAAACTTCCATAATGAGGACAAGGGATTTATGGTTTTGGATGGTGATGTTTTTGACGTT
CCAATTAGGAAGGATATTGTTCACAGGGTAGTAAGGTGGCAGCTTGCTAAAAGGCAACAG
GGGACACACTCAACTAAAACTATCAGTGAAGTGAGCGGCACAGGAAGAAAGCCTTATAAA
CAAAAGGGAACTGGAAGAGCACGTCATGGAACATTGCGTGGTTGTCAGTTTCGAGGAGGT
GCAACTATGCATGGCCCGAAACCACGAAGCCATGCATTCAAGTTGCAGAAGAAAGTACGA
CGTCTGGGACTTAAGATAGCCTTGTCTGCTAGAACAGCTGAGGGGAAGCTCTGCATCTTT
GAGGACTTAGAAGTCCCTAGCCACAAGACGAAAAACATCGTGCAGTACATAAAGCAGATG
GATGATACGAAGAAGATATTGTTGGTGGATGGAGGTGACATTGATAAGAAGTTAAAGCTG
GCTACTCAAAATCTTCACTACGTGAATGTCATTCCTTCGATTGGCCTCAATGTCTACAGC
ATCCTGCAGCATGACACCCTCGTAATGACTCGGGACGCCATCAACAGAATCGTTGAGCGG
ATGCACACCCCCATCAGCCGCTAGCAAGCAGGCTTATCACGGCTTCAAAGAACCTTGCTA
CTCATACGACATCTTTTATCCGATTTTTGGTACAACAGCTCTGATCACACCGTTCATGAG
CAGGCCAAAGTGCAGCCCAACCCTTTTGATTATCTGTTGTACGGAAATTGTAGCGCTAAC
TGTCGGTATGTGTAGCGGTTCCGGGCTTCAAATCCCAGTGTTTTTGTTGTTGCGGACGTG
CTTTAAGCCCCCTATAAGCTACCAGGCTCCCAGTCTCTTGTGCTGGTGGAAGCTGGTGCA
TTTTTCTACTTGTCAAGATGCTACATTTATTATATCAGCTAGTTGTTTTGACAACCTGAA
ATTCTGCTGGATGTAATGTGTGAAAGTAGGGAACCAATGGGTTGTACTGAATACATGCCC
ATCCTAGGTTATTCAATAAAATAATTTTTGTAAAAAAAAAAAAAAAACGGTCGAGGGGGG
GC

Homology of Contig U35_4015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g37510.1	287	1e-166	protein\|ribosomal protein L4, putative, expressed
Brachypodium v1_2	Bradi4g15150.1	290	1e-173
Arabidopsis v10	AT2G20060.1	300	1e-130	Ribosomal protein L4/L1 family \| chr2:8659384-8661227 FORWARD LENGTH=300