barSeed - Barley Seed Development Database

Probe CUST_32408_PI390587928

Source Contig U35_4019

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32408_PI390587928	Hv_44K_v2	TTCGGTGTGTAGCTATTTTCTTGATAAAGAGTACTTCTGCCTGTTTTGTTGCACATATTT	834	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.034	1.161	1.176	0.980	0.352	0.289
Raw	1948.140	3475.880	3039.327	4038.010	504.138	449.068

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39989.1	1004	8e-25	825 - 884	100	60 / 60	plus
Harvest35	U35_4019	944	3e-25	835 - 894	100	60 / 60	plus

Contig Sequence (944 bp)

>U35_4019 944 Hv_44K_v2
GCACCCGCAAGATCTCGACCCGCCGCGTCCCCCTCTTGCGTCGATTGACGGGAGAGGCCG
GGTCGGCGGAAGGCGGCGGCGATGAGCGCGGTGAACATCACCAACGTGGCGGTGCTGGAC
AACCCCACCGCCTTCCTCAACCCCTTCCAGTTCGAGATCTCCTACGAGTGCCTCGTCCCC
CTCGACGACGATCTGGAATGGAAGCTCACATATGTTGGATCAGCGGAAGATGAAACCTAT
GATCAGCAACTTGAGAGTGTGCTTGTTGGACCTGTCAATGTTGGAACCTACCGTTTTGTA
TTCCAGGCTGACCCACCGGACCCTTTGAAGATCCGTGAAGAAGACATCATCGGTGTCACC
GTGCTGCTATTGACATGCTCCTACGTGGGGCAGGAGTTCATGAGAGTGGGTTATTATGTG
AACAACGACTATGACGATGAACAGCTGAGAGAAGAGCCCCCAGCGAAGCTATTACTTGAT
AGGGTGCAGAGAAACATTTTGGCCGACAAGCCCCGTGTCACCAAGTTCCCTATCAACTTC
CACCCTGAACCCGGCACGAGCTCAGAACAGCCGCAGCAGGATGCAGAACAGCTGCAGCAA
CCGGCTTCGCCGGAACCACAGATGGCTCCAGTAGAACCACAGACGGCGCCACTAGAGGAC
GGCACGGCTGATGAAATTAAGCCCAGCGCTATCGCCCTATGATCGGAGTTGGGGTGCTAA
TGTTCTGTTCTCCGTGCCTTTGAGGTGTGTCTTGTAATGCTACGAATCAAGAGTGGTGGT
TCTGCATTGTACTGGTCTGTTGTTGACGTTTCACAATCTGTTCTGTTGCAAATGTTCGGT
GTGTAGCTATTTTCTTGATAAAGAGTACTTCTGCCTGTTTTGTTGCACATATTTGTTTTT
TTACTGGACCAGATTGCTTCAGCCTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_4019 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48030.1	189	4e-108	protein\|anti-silencing protein, ASF1-like domain containing protein, expressed
Brachypodium v1_2	Bradi2g17266.1	199	3e-117
Arabidopsis v10	AT5G38110.1	218	6e-94	\| Symbols: SGA1, SGA01, ASF1B \| anti- silencing function 1b \| chr5:15208643-15210064 FORWARD LENGTH=218