barSeed - Barley Seed Development Database

Probe CUST_32406_PI390587928

Source Contig U35_4021

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32406_PI390587928	Hv_44K_v2	GGTGATGAACTGGACCATTTATACCCAGGAATGTGAGTGAGGGTATAGCTATCAAACAAA	1476	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361898	2571	7e-23	2491 - 2547	100	57 / 57	plus	ABC10502 ABC42630
MLOC	MLOC_18304.1	3106	7e-23	2530 - 2586	100	57 / 57	plus	ABC10502 ABC42630
JLOC1	JLOC1_12667.1	2033	4e-23	1634 - 1690	100	57 / 57	plus
Harvest21	ABC10502	1554	1e-23	1477 - 1533	100	57 / 57	plus	ABC10502
Harvest35	U35_4021	1550	3e-25	1477 - 1536	100	60 / 60	plus

Contig Sequence (1550 bp)

>U35_4021 1550 Hv_44K_v2
CACGGGGCGGCCTGGCAGCCATGGTCGGCATCCCCACGAGCTGCTCATGAACATGGCCAC
CAGCATGAAGGCCGCCGACAAGTGGGTCGAGAAGAACGTCTCCCACTACCTCAACAAAGG
CTGCAACGTCAGGTATGTTGCGGTTGGTAATGAGCCTTTCCTGTCGACATACAATGGAAG
CTTTCTGCAAACTACTTTTCCTGCCCTCAAAAACATACAAAGTGCACTTGTGAGGGCTGG
GTTGAGCAGTCAAATCAAAGTAACTGTTCCTCAGAATGCTGATGTCTACGATACATCAAC
TGGCAAGCCTTCTGACGGGGATTTTCGCACAGATATTCACGATAAGATACTCGAAATTGT
GAAGTTTCTGAGTGATAATAGCGGTGTTTTTACTGTCAACATCTACCCTTTCATAAGCCT
CTACATTGATCCAAACTTCCCCGCCGAGTATGCTTTCTTTGACGGGCGCTCACAGCCCGT
TGTTGATGGCTCTGCAACATATACAAACATGTTTGATGCAAACCACGACACACTCATCTG
GGCTCTGAAGAAGAATGGATATGGGAATCTGCCGATCGTTATTGGGGAGATAGGCTGGCC
AACTGATGGTGACATGAACGCAAATGCTCAGCTCGCCCAGCGCTTCAACCAAGGCTTCAT
GACACACATCGCCACTGGGCGAGGGACACCGATGAGGCCTGGACCGATTGACGCTTACTT
ATTCAGTCTGATCGATGAAGATGACAAGAGCATACAGCCAGGGAATTTCGAGCGCCACTG
GGGGATCTTCACATACGATGGCATCCCAAAGTATCAACTGAACTTCGGTGTGCCAAATTC
AGAGATCAAAAGAGCAAGCGGCGTGAAGTACCTTGACAAGAAATGGTGTGTGCTGAAGCC
TACTGTCAGCCTCGACGACCCAAAGCTTCCAGACACGGTGAGCTACGCGTGCTCCAGGGC
AGACTGCACCAGCCTTGGCTACAGGACTTCTTGCGGGATGCTGGACATCCGGAGCAACAT
CTCGTACGCCTACAACAGCTTCTACCAGAAGAACGATCAAGACGACGTGGCCTGTGGCTT
CTCAGGCTATGCAACGACCACCGGCCAAGACCCCAGCACCGGGACATGCAGGTTCGGGAT
CATGATCGAGGTCGACTCGGCCTACTCGTGGAAGCCGCGGCTGGTCCGGAGCAACTACCT
CCTGGTGCTTCTCCTTGCACTTGTTCACCTGTGTGTGTCATCCTCATAGGTGCTTTTTTT
TCTGCCAAAGATGGCTCGGCCATGAGAGCATCAACAGCCTGGCAGCTTAGAGGGATATTT
GAATGCCTGCTGTCAGTGCGTTCATCCATGTAGGAACCTTTTTCGACCTTTTTCTATTTC
TTCTTCTAATTTCGGTGGATTCGGACGTCGCAGCCGCATGGTTGAATTCTCCTTTTTAGC
GTAGCTTTGATCTTCCGGTACCATTGTGATTGGGATGGTGATGAACTGGACCATTTATAC
CCAGGAATGTGAGTGAGGGTATAGCTATCAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_4021 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g04670.1	490	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g03520.1	491
Arabidopsis v10	AT5G58090.1	477	O-Glycosyl hydrolases family 17 protein \| chr5:23505556-23507193 REVERSE LENGTH=477