barSeed - Barley Seed Development Database

Probe CUST_32397_PI390587928

Source Contig U35_4030

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32397_PI390587928	Hv_44K_v2	GTGTACAGAAAGAAATGCCTGCATAATTCCGTCTGTGTGTACAGAAAGAAATCCGCATCT	1876	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26248.1	3325	2e-24	70 - 129	100	60 / 60	minus	ABC09063
JLOC1	JLOC1_17833.1	3421	8e-25	3204 - 3263	100	60 / 60	plus
Harvest21	ABC09063	1936	3e-25	1877 - 1936	100	60 / 60	plus	ABC09063
Harvest35	U35_4030	1936	3e-25	1877 - 1936	100	60 / 60	plus

Contig Sequence (1936 bp)

>U35_4030 1936 Hv_44K_v2
GTTAATATGGTTGCAGAGGCTGCTATATCTAGGGTTCGTTTGGAGTAGATCCAGATATGC
TTGCTCAAAGGGATCGTAACCGTGATATACTGCTTCAGAAACTTGCTGCTTCTGTGGAAA
GCAGGGATAAAGTACTGGTTGAGATGTCACGCCTGTTGATATTAGAAAGCAGGTTCCGTA
TTGGCAGAAACTTCAATCTGGAAGATGCTAGAGCTAGTCTGGAAGCTAGTTTTGCCAGTG
AAGCAGAAATTGTTTTTACTACAGTATCAAGCAGTGGTCGCAAGTTATTTTCTGCCCTTA
GTCATGGCTTTGATATGGTTGTTATTGATGAGGCTGCTCAGGCCAGTGAAGTAGGAGTCC
TCCCTCCACTTACACTTGGTGCAGCTAGATGTGTCTTGGTTGGTGATCCACAACAGCTCC
CTGCCACTGTTATTAGCAAAGCTGCTGGAACTTTACTCTACAGCAGGAGCCTTTTCGAGA
GGTTTCAGCAAGCTGGTTGCCCTACCATTTTGCTGTCAGTGCAATATCGGATGCATCCCC
AGATCCGTGAATTTCCATCAAGATACTTCTACCAAGGCCACCTTACAGATAGTGAAAGTG
TCGCCAACTTGCCCGATGAGGCATTCTATAGAGATGCATTAATGGCACCTTACATTTTCT
ATGACATCTCGCATGGACGTGAGTCCCATAGAGATGGGTCATCTTCATACCAGAATGTCC
ATGAAGCACAGTTTGCGTTGTGTTTGTATGAGCATCTTCAGAAGTTCCTGAGAGCTAATG
GTGGCAAGAGAGCATGTGTTGGTATAATCACTCCTTATAAGTTGCAGTTGAAGTGTCTTC
AGCGAGAATTTGCGGAAGTTATGAATACCGAGGAAGGGAAAGATATCTACATAAACACAG
TTGATGCTTTTCAAGGCCAGGAGCGTGATGTGATTATTATGTCATGTGTCCGTGCCTCAA
ACCACGGTGTCGGTTTTGTTGCAGATATACGCCGTATGAATGTTGCTCTTACTCGAGCTA
GGAGAGCTCTATGGGTTATTGGTAATGCCAATGCCCTCATGCAGTCAGAGGATTGGGCGG
CACTGGTAGCAGATGCAAAGGCGAGGAAGTGTTTCATGGACTTGAGCAGCATCCCGAGTG
ACTTCCTAGCTATGAACAACTTTTCAAACGCCCGGGGCCTGAATTCTTCAAGCAACACAA
GGTACATGAGGACTAGTGGACCGAGACCGAGGCATTTCGACATGCTTCCGGCACCCAGGA
TGGGCATGACAGCCGGTGAGGTTGGCCATCCCAACCCTGTTGCGAGAAATGGTAGTTACC
GGAATCTGTCCAATGACGTGGGGCATCCTGGTGATAGATCTAGAGATAATTTGCAGTTTG
GGAGGATCAGGGGTCCGAATCCGTCCAATGATCCGAGGAGACAAGCCTAAAGAGAACAAA
TTGATGTCTGCAGGTTTTTGCTTGTAGTGGTGCAGCATGGAAGAATGGTGATGAAGCAGG
ATGTTGCCTGTTGCTACTAATAGGATGCTGTCGTATTGGGACATGGGCTATGGCTCTTGA
TTTTGTCTGGCTGCTGAACAAATGGCTGCCTCAAGCCCTCGGCGTTGTGGAACCATGGAG
GACCAAGTTATTTGAACAAGGCTGTCATCTGGACAGATGTTGCCTGGCATTGCTTTAGTC
TACTTTCTATAGATTTGGGTATTGTACGCTAGCGGGCATTTTCATTTTGAAACCTGATCT
ATAGCAGGCAAATCTGGGCTAGGTCATTTCGAAACGGTCATATGGTGGGTTAGGGCTAAA
GGTTTGCGACTAGATATGCCATATTGCCATGTATGACTGGTTTGCTGTTGTAGACCGCCT
GCATAATTCCGTCTGTGTGTACAGAAAGAAATGCCTGCATAATTCCGTCTGTGTGTACAG
AAAGAAATCCGCATCT

Homology of Contig U35_4030 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g02930.1	188	5e-88	protein\|helicase SEN1, putative, expressed
Brachypodium v1_2	Bradi4g14650.1	1164	0.0
Arabidopsis v10	AT4G30100.1	1311	0.0	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr4:14714191-14719335 FORWARD LENGTH=1311