barSeed - Barley Seed Development Database

Probe CUST_32384_PI390587928

Source Contig U35_4043

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32384_PI390587928	Hv_44K_v2	CAGACAGATACATGAACCCACCATGTTTATGTTCAAATTTAGCTTCTTTTACTTGTGTTC	1014	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.545	6.354	1.488	0.629	0.278	0.339
Raw	186.237	264.745	51.375	38.674	3.409	6.715

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_34710.3	1268	8e-25	1076 - 1135	100	60 / 60	plus
JLOC1	JLOC1_34710.2	1316	8e-25	1124 - 1183	100	60 / 60	plus
JLOC1	JLOC1_34710.1	1288	8e-25	1096 - 1155	100	60 / 60	plus
Harvest35	U35_4043	1121	3e-25	1015 - 1074	100	60 / 60	plus

Contig Sequence (1121 bp)

>U35_4043 1121 Hv_44K_v2
GTGCTTTACCTTATCTGCCGCATTCCAACTCATGTTGTTATTCTGAGCAAAACTCGACTC
GCTCGCTCGTCTCGACATCTGCACCGGATCGAGCTCAGCAAAGCCCGAGCCGGAGGCGCT
CGTCTGCCCGGGGAGCGGCGCCATGCGGGTCCGCCTCTTCCTCTGAACCGGGCAAGCGCG
AGCCGCCTTCTTCCTCCGGCTCGGCGTCGGCGGCGACGACGAGCGTCGGTGGCGGCATAG
CACGGTCCAGCGACGAGCAGGATTTCATGTAGAGGAGGGCAATCTGTTCTCATCCCCTCG
ACTTCCAGCAGAGCGTGCGAAGTCTCGTCCGCAGCAACGACGACGCCGGCTCAGGCAGCC
GCGGGCACGGCAATGCCGGTTCCTCTTGCCCCTTACCCAACTCCTCCTGCGCCCTTCACG
CCACCCGCTCCCAATGCAGGGGCTCAAAGCCAACTTGTCTGCTCTGGGTGCCGGAATCTG
CTCATGTATCCTGCCGGCGCAACGTCGGTATGCTGCGCGGTTTGCAGTACCGTGACCGCT
GTTCCGGCTCCTGGGACCGAGATGGCGCAGCTAGTTTGCGGAGGATGCCACACTCTTCTG
ATGTACATACGTGGTGCCACAAGTGTACAGTGTTCTTGCTGCCACACTGTCAACCTGGCA
ATGGAAGCGAATCAGGTTGCGCATGTAAACTGTGGGAGTTGCCGAATGCTGCTCATGTAC
CAGTACGGCGCAAGGTCCGTCAAATGTGCAGTCTGCAGTTTCGTGACATCAGTTGGGGCA
TCATCGGGTGCAGAGCAGAAGCCCAGCAACTGAAATCCTGCAAGTTCATTACGAAGGCAG
CTTCCCGAAATAAGAATGCTTTGAGTGCACATGTATAGAGTTCTTCCCAGAAGCAACCTT
TTCCTCCCCTCTCCATTTCTCCCTTCGTTGGACCTGGCGAGCTTGCGGAATAAACAAGAG
TTTTTGGTAATACATAGTTGCTCAAAATTCGTCGAATCATCTGTGTAACTGGGTCAGACA
GATACATGAACCCACCATGTTTATGTTCAAATTTAGCTTCTTTTACTTGTGTTCTATATA
TTTCAGATTTTTTTTCTTGTGGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4043 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06280.7	144	7e-64	protein\|LSD1 zinc finger domain containing protein, expressed
Brachypodium v1_2	Bradi3g16400.1	147	2e-64
Arabidopsis v10	AT1G32540.1	187	3e-57	\| Symbols: LOL1 \| lsd one like 1 \| chr1:11768253-11769591 FORWARD LENGTH=187