- Probe CUST_32374_PI390587928
- Source Contig U35_50529
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_32374_PI390587928 | Hv_44K_v2 | AATCAGAACGTTGGTGTTGCAGTCCGTTCCATCCATGTGCAACTTTAATGTCCCACCTAA | 567 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.011 | 0.010 | 0.305 | 1.772 | 3.123 | 4.034 |
Raw | 51.092 | 67.546 | 4538.257 | 37601.133 | 24432.400 | 34480.433 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_45609.1 | 564 | 2e-24 | 205 - 264 | 100 | 60 / 60 | minus | ABC00518 ABC00817 ABC28944 ABC32433 ABC43834 |
JLOC1 | JLOC1_29606.1 | 580 | 8e-25 | 221 - 280 | 100 | 60 / 60 | minus | |
Harvest21 | ABC52731 | 600 | 3e-25 | 370 - 429 | 100 | 60 / 60 | plus | |
Harvest21 | ABC52722 | 643 | 3e-25 | 568 - 627 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00817 | 1613 | 3e-25 | 1178 - 1237 | 100 | 60 / 60 | plus | ABC00817 |
Harvest21 | ABC43834 | 311 | 4e-24 | 209 - 266 | 100 | 58 / 58 | minus | ABC43834 |
Harvest35 | U35_50535 | 600 | 3e-25 | 370 - 429 | 100 | 60 / 60 | plus | |
Harvest35 | U35_50529 | 643 | 3e-25 | 568 - 627 | 100 | 60 / 60 | plus | |
Harvest35 | U35_22 | 1147 | 3e-25 | 854 - 913 | 100 | 60 / 60 | plus | |
Harvest35 | U35_208 | 918 | 5e-23 | 860 - 918 | 98 | 58 / 59 | plus |
Contig Sequence (643 bp)
>U35_50529 643 Hv_44K_v2 ACAACAACCATTCCCTCAGCAACCACAACAACCATTTCCTCAATCCCAGCAGCAATGCCT CCAGCAACCACAACACCAATTTCCCCAACCCACACAACAGTTCCCCCAACGGCCACTACT ACCGTTTACCCACCCGTTCCTACCATTCCCCGACCAACTACTCCCTCAGCCACCACACCA ATCATTCCCCCAGCCCCCACAATCATACCCTCAGCCACCGTTACAACCTTTTCCTCAGCC CCCGCAACAAAAATATCCCGAGCAACCACAACAACCATTTCCTTGGCAACAACCAACTAT TCAGCTATATCTCCAACAACAACTGAATTCGTGCAAGGAGTTTCTCTTGCAACAGTGCAG GCCTGTGTCATTGTTATCGTACCTCTGGTCAAAGATCTTGCAACAGAGCAGTTGTCGGGT GATGCAGCAACAGTGTTGCCTGCAATTGGCACAGATCCCTGAACAATACAAATGCACAGC AATTGATAGCATTGTGCATGCCATCTTCATGCAGCAAGGCCAAAGACAAGGCGTGCAGAT CGTGCAACAACTAGCTCAAATGGAAGCAATCAGAACGTTGGTGTTGCAGTCCGTTCCATC CATGTGCAACTTTAATGTCCCACCTAACTGCTCCACCATCAAA
Homology of Contig U35_50529 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |