barSeed - Barley Seed Development Database

Probe CUST_32373_PI390587928

Source Contig U35_36237

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32373_PI390587928	Hv_44K_v2	CTCACAGATACAGACTGCACAGTATGTACAGAAAGAAAGAACGATGGTAAATATTGATCA	51	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.578	1.446	1.094	0.899	0.276	0.494
Raw	112.832	163.748	107.052	139.973	15.743	28.723

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62857.3	801	2e-24	723 - 782	100	60 / 60	plus	None
MLOC	MLOC_62857.1	1467	2e-24	23 - 82	100	60 / 60	minus	None
MLOC	MLOC_62857.2	1005	2e-24	22 - 81	100	60 / 60	minus	None
JLOC1	JLOC1_41159.3	950	8e-25	846 - 905	100	60 / 60	plus
JLOC1	JLOC1_41159.2	1488	8e-25	1384 - 1443	100	60 / 60	plus
JLOC1	JLOC1_41159.1	570	8e-25	466 - 525	100	60 / 60	plus
Harvest35	U35_36237	695	3e-25	52 - 111	100	60 / 60	minus

Contig Sequence (695 bp)

>U35_36237 695 Hv_44K_v2
GGCGAATTGGGCCTTCCAGATGATGCTCGAGCGGCCGCTCTTTCATTCACTTGATCAATA
TTTACCATCGTTCTTTCTTTCTGTACATACTGTGCAGTCTGTATCTGTGAGAGACTCTGG
TTGCTCAATAAGTGCAGAAAATCACCAACGTTTTTCGCATATAACATTTACAGACGGATG
AACATAAGCAACAGCAGGTTCTAGCTCAGAGTTACTTTGAGACACAAGTGTACGGTGCCA
AAAGATTTCAATTATAGCGGTGATCGGCCCGTGGCCTTGGCAAAGAATGACAGTTATGTG
TGCTGCCTTATGCTGATTAGCTCGATGTCGAAGATGACAGTTCCAAGGGTTGAACCCTCG
CCATTCGCGAGGCGTGTCGGGTTGAATATGGTAGTGAATAATCTCTGCCGATCAAAGAAA
TTAGGAGGAATTGGTTCCTGTGATGTGTTTTGGTATCCCTGTGATGGCGGAATGACCACA
CGGCGAAGACCACCGACTCTCATGGATTTCACTGCTGCTTCAATACCAGGTATAACGTTT
CCAGACCCGATGGTAAAGACAAAAGGTATCGGATCACCGGTCGCGTCCTTGTGATCATAG
GTTGAGTCGAAGCGCCATCCTTGCTTCGCAGCCAGCCTCCCATAGTAGTGAATTGCAACC
TGGTCTCCGTCGACCGGGACCTCGCCGGAACCCTC

Homology of Contig U35_36237 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07220.1	214	7e-88	protein\|peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
Brachypodium v1_2	Bradi3g05150.1	207	5e-88
Arabidopsis v10	AT4G19830.1	229	5e-76	FKBP-like peptidyl-prolyl cis-trans isomerase family protein \| chr4:10772579-10773933 REVERSE LENGTH=229